Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC15.03■□□□□ -0
LIM2P55344 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC15.03■□□□□ -0
LIM2P55344 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LIM2P55344 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC15.03■□□□□ -0
LIM2P55344 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC15.03■□□□□ -0
LIM2P55344 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC15.02■□□□□ -0
LIM2P55344 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC15.02■□□□□ -0
LIM2P55344 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
LIM2P55344 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC15.02■□□□□ -0
LIM2P55344 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
LIM2P55344 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
LIM2P55344 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
LIM2P55344 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC15.02■□□□□ -0
LIM2P55344 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC15.02■□□□□ -0
LIM2P55344 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
LIM2P55344 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC15.02■□□□□ -0
LIM2P55344 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC15.02■□□□□ -0
LIM2P55344 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
LIM2P55344 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC15.02■□□□□ -0
LIM2P55344 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
LIM2P55344 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
LIM2P55344 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
LIM2P55344 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC15.02■□□□□ -0
LIM2P55344 RAC2-202ENST00000401529 569 ntTSL 4 BASIC15.02■□□□□ -0
LIM2P55344 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC15.02■□□□□ -0
LIM2P55344 NME4-207ENST00000450036 985 ntTSL 3 BASIC15.02■□□□□ -0
LIM2P55344 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC15.02■□□□□ -0
LIM2P55344 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC15.02■□□□□ -0
LIM2P55344 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC15.02■□□□□ -0
LIM2P55344 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC15.02■□□□□ -0
LIM2P55344 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC15.02■□□□□ -0
LIM2P55344 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC15.02■□□□□ -0
LIM2P55344 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC15.02■□□□□ -0
LIM2P55344 AC010336.2-201ENST00000564226 506 ntBASIC15.02■□□□□ -0
LIM2P55344 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC15.02■□□□□ -0
LIM2P55344 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC15.02■□□□□ -0
LIM2P55344 AC097359.3-201ENST00000603982 1210 ntBASIC15.02■□□□□ -0
LIM2P55344 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC15.02■□□□□ -0
LIM2P55344 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC15.02■□□□□ -0
LIM2P55344 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC15.02■□□□□ -0
LIM2P55344 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC15.02■□□□□ -0
LIM2P55344 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
LIM2P55344 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC15.02□□□□□ -0.01
LIM2P55344 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC15.02□□□□□ -0.01
LIM2P55344 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
LIM2P55344 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LIM2P55344 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LIM2P55344 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LIM2P55344 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LIM2P55344 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
LIM2P55344 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
LIM2P55344 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC15.02□□□□□ -0.01
LIM2P55344 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC15.02□□□□□ -0.01
LIM2P55344 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
LIM2P55344 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LIM2P55344 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
LIM2P55344 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LIM2P55344 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
LIM2P55344 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LIM2P55344 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
LIM2P55344 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
LIM2P55344 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
LIM2P55344 DKFZP434H168-201ENST00000567381 1905 ntBASIC15.02□□□□□ -0.01
LIM2P55344 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIM2P55344 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC15.01□□□□□ -0.01
LIM2P55344 AC092850.2-201ENST00000623821 2697 ntBASIC15.01□□□□□ -0.01
LIM2P55344 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIM2P55344 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LIM2P55344 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LIM2P55344 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC15.01□□□□□ -0.01
LIM2P55344 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC15.01□□□□□ -0.01
LIM2P55344 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC15.01□□□□□ -0.01
LIM2P55344 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
LIM2P55344 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC15.01□□□□□ -0.01
LIM2P55344 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIM2P55344 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
LIM2P55344 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIM2P55344 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LIM2P55344 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC15.01□□□□□ -0.01
LIM2P55344 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIM2P55344 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIM2P55344 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
LIM2P55344 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
LIM2P55344 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
LIM2P55344 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIM2P55344 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LIM2P55344 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC15.01□□□□□ -0.01
LIM2P55344 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC15.01□□□□□ -0.01
LIM2P55344 AC136604.1-201ENST00000418535 575 ntBASIC15.01□□□□□ -0.01
LIM2P55344 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC15.01□□□□□ -0.01
LIM2P55344 TSSK5P-201ENST00000423978 907 ntBASIC15.01□□□□□ -0.01
LIM2P55344 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LIM2P55344 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC15.01□□□□□ -0.01
LIM2P55344 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC15.01□□□□□ -0.01
LIM2P55344 AC093214.1-201ENST00000511688 1107 ntBASIC15.01□□□□□ -0.01
LIM2P55344 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
LIM2P55344 DUT-210ENST00000559935 569 ntTSL 3 BASIC15.01□□□□□ -0.01
LIM2P55344 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC15.01□□□□□ -0.01
LIM2P55344 AL844908.2-201ENST00000609461 460 ntBASIC15.01□□□□□ -0.01
LIM2P55344 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms