Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
RFC4P35249 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
RFC4P35249 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RFC4P35249 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC19.67■□□□□ 0.74
RFC4P35249 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC19.67■□□□□ 0.74
RFC4P35249 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC19.67■□□□□ 0.74
RFC4P35249 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RFC4P35249 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RFC4P35249 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RFC4P35249 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC19.66■□□□□ 0.74
RFC4P35249 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
RFC4P35249 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
RFC4P35249 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
RFC4P35249 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
RFC4P35249 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
RFC4P35249 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RFC4P35249 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RFC4P35249 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
RFC4P35249 RNU1-114P-201ENST00000365297 166 ntBASIC19.66■□□□□ 0.74
RFC4P35249 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
RFC4P35249 HSPB1P2-201ENST00000448722 546 ntBASIC19.66■□□□□ 0.74
RFC4P35249 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
RFC4P35249 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
RFC4P35249 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC19.66■□□□□ 0.74
RFC4P35249 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC19.66■□□□□ 0.74
RFC4P35249 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC19.66■□□□□ 0.74
RFC4P35249 SNX1-214ENST00000625244 324 ntTSL 5 BASIC19.66■□□□□ 0.74
RFC4P35249 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RFC4P35249 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RFC4P35249 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RFC4P35249 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RFC4P35249 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC19.66■□□□□ 0.74
RFC4P35249 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC19.66■□□□□ 0.74
RFC4P35249 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
RFC4P35249 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
RFC4P35249 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC19.66■□□□□ 0.74
RFC4P35249 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
RFC4P35249 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC19.66■□□□□ 0.74
RFC4P35249 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
RFC4P35249 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
RFC4P35249 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
RFC4P35249 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
RFC4P35249 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
RFC4P35249 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
RFC4P35249 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC19.66■□□□□ 0.74
RFC4P35249 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RFC4P35249 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC19.65■□□□□ 0.74
RFC4P35249 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC19.65■□□□□ 0.74
RFC4P35249 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
RFC4P35249 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
RFC4P35249 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC19.65■□□□□ 0.74
RFC4P35249 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RFC4P35249 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RFC4P35249 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RFC4P35249 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
RFC4P35249 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RFC4P35249 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC19.65■□□□□ 0.74
RFC4P35249 KRTAP19-9P-201ENST00000421795 191 ntBASIC19.65■□□□□ 0.74
RFC4P35249 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC19.65■□□□□ 0.74
RFC4P35249 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC19.65■□□□□ 0.74
RFC4P35249 MPRIPP1-201ENST00000452433 1089 ntBASIC19.65■□□□□ 0.74
RFC4P35249 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC19.65■□□□□ 0.74
RFC4P35249 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
RFC4P35249 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC19.65■□□□□ 0.74
RFC4P35249 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC19.65■□□□□ 0.74
RFC4P35249 CHMP4BP1-201ENST00000556017 588 ntBASIC19.65■□□□□ 0.74
RFC4P35249 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC19.65■□□□□ 0.74
RFC4P35249 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RFC4P35249 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC19.65■□□□□ 0.74
RFC4P35249 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC19.65■□□□□ 0.74
RFC4P35249 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC19.65■□□□□ 0.74
RFC4P35249 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC19.65■□□□□ 0.74
RFC4P35249 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RFC4P35249 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RFC4P35249 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RFC4P35249 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RFC4P35249 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC19.65■□□□□ 0.74
RFC4P35249 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RFC4P35249 KRT8P19-201ENST00000551916 1455 ntBASIC19.65■□□□□ 0.74
RFC4P35249 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC19.65■□□□□ 0.74
RFC4P35249 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RFC4P35249 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RFC4P35249 AL023775.1-201ENST00000454907 1746 ntBASIC19.65■□□□□ 0.74
RFC4P35249 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RFC4P35249 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
RFC4P35249 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
RFC4P35249 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
RFC4P35249 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
RFC4P35249 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
RFC4P35249 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
RFC4P35249 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RFC4P35249 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RFC4P35249 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
RFC4P35249 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
RFC4P35249 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
RFC4P35249 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RFC4P35249 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
RFC4P35249 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC19.64■□□□□ 0.73
RFC4P35249 TSACC-208ENST00000481479 741 ntTSL 2 BASIC19.64■□□□□ 0.73
RFC4P35249 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms