Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
COL5A3P25940 MIR4683-201ENST00000579659 81 ntBASIC19.44■□□□□ 0.7
COL5A3P25940 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
COL5A3P25940 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC19.44■□□□□ 0.7
COL5A3P25940 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL5A3P25940 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC19.44■□□□□ 0.7
COL5A3P25940 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL5A3P25940 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC19.43■□□□□ 0.7
COL5A3P25940 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
COL5A3P25940 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC19.43■□□□□ 0.7
COL5A3P25940 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL5A3P25940 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC19.43■□□□□ 0.7
COL5A3P25940 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC19.43■□□□□ 0.7
COL5A3P25940 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL5A3P25940 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC19.43■□□□□ 0.7
COL5A3P25940 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL5A3P25940 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC19.43■□□□□ 0.7
COL5A3P25940 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
COL5A3P25940 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
COL5A3P25940 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL5A3P25940 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL5A3P25940 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL5A3P25940 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL5A3P25940 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC19.43■□□□□ 0.7
COL5A3P25940 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
COL5A3P25940 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL5A3P25940 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC19.43■□□□□ 0.7
COL5A3P25940 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC19.43■□□□□ 0.7
COL5A3P25940 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL5A3P25940 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL5A3P25940 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL5A3P25940 YRDCP1-201ENST00000621419 643 ntBASIC19.43■□□□□ 0.7
COL5A3P25940 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL5A3P25940 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC19.43■□□□□ 0.7
COL5A3P25940 AC092978.1-202ENST00000637590 1327 ntBASIC19.43■□□□□ 0.7
COL5A3P25940 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC19.43■□□□□ 0.7
COL5A3P25940 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL5A3P25940 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
COL5A3P25940 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL5A3P25940 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL5A3P25940 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL5A3P25940 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC19.43■□□□□ 0.7
COL5A3P25940 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC19.43■□□□□ 0.7
COL5A3P25940 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL5A3P25940 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC19.42■□□□□ 0.7
COL5A3P25940 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL5A3P25940 IGF1-203ENST00000392904 761 ntTSL 5 BASIC19.42■□□□□ 0.7
COL5A3P25940 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC19.42■□□□□ 0.7
COL5A3P25940 SUPT4H1P2-201ENST00000501248 353 ntBASIC19.42■□□□□ 0.7
COL5A3P25940 LINC02447-202ENST00000501888 2146 ntBASIC19.42■□□□□ 0.7
COL5A3P25940 MIR5572-201ENST00000583188 137 ntBASIC19.42■□□□□ 0.7
COL5A3P25940 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC19.42■□□□□ 0.7
COL5A3P25940 CU633904.3-201ENST00000624042 1029 ntBASIC19.42■□□□□ 0.7
COL5A3P25940 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL5A3P25940 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
COL5A3P25940 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL5A3P25940 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC19.42■□□□□ 0.7
COL5A3P25940 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC19.42■□□□□ 0.7
COL5A3P25940 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL5A3P25940 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL5A3P25940 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL5A3P25940 AL023803.2-201ENST00000620080 638 ntBASIC19.42■□□□□ 0.7
COL5A3P25940 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC19.42■□□□□ 0.7
COL5A3P25940 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL5A3P25940 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL5A3P25940 AP000593.2-201ENST00000542775 1433 ntBASIC19.42■□□□□ 0.7
COL5A3P25940 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL5A3P25940 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL5A3P25940 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL5A3P25940 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
COL5A3P25940 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
COL5A3P25940 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL5A3P25940 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL5A3P25940 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL5A3P25940 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
COL5A3P25940 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL5A3P25940 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL5A3P25940 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC19.41■□□□□ 0.7
COL5A3P25940 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL5A3P25940 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC19.41■□□□□ 0.7
COL5A3P25940 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL5A3P25940 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL5A3P25940 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL5A3P25940 RBM38-204ENST00000371219 760 ntTSL 2 BASIC19.41■□□□□ 0.7
COL5A3P25940 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
COL5A3P25940 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL5A3P25940 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL5A3P25940 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL5A3P25940 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL5A3P25940 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC19.41■□□□□ 0.7
COL5A3P25940 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL5A3P25940 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC19.41■□□□□ 0.7
COL5A3P25940 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL5A3P25940 MESTP3-201ENST00000503460 968 ntBASIC19.41■□□□□ 0.7
COL5A3P25940 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL5A3P25940 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
COL5A3P25940 AC005324.6-201ENST00000587972 613 ntBASIC19.41■□□□□ 0.7
COL5A3P25940 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC19.41■□□□□ 0.7
COL5A3P25940 AP003419.4-201ENST00000616071 517 ntBASIC19.41■□□□□ 0.7
COL5A3P25940 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms