Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC15.41■□□□□ 0.06
LDLRP01130 YTHDF3-AS1-201ENST00000603538 718 ntBASIC15.41■□□□□ 0.06
LDLRP01130 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LDLRP01130 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC15.41■□□□□ 0.06
LDLRP01130 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC15.41■□□□□ 0.06
LDLRP01130 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
LDLRP01130 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LDLRP01130 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LDLRP01130 AC020658.6-201ENST00000623564 1870 ntBASIC15.41■□□□□ 0.06
LDLRP01130 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LDLRP01130 AP003680.1-201ENST00000598970 3660 ntBASIC15.41■□□□□ 0.06
LDLRP01130 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC15.41■□□□□ 0.06
LDLRP01130 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC15.41■□□□□ 0.06
LDLRP01130 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC15.41■□□□□ 0.06
LDLRP01130 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
LDLRP01130 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC15.41■□□□□ 0.06
LDLRP01130 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LDLRP01130 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LDLRP01130 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LDLRP01130 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC15.41■□□□□ 0.06
LDLRP01130 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC15.41■□□□□ 0.06
LDLRP01130 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LDLRP01130 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LDLRP01130 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LDLRP01130 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LDLRP01130 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
LDLRP01130 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC15.4■□□□□ 0.06
LDLRP01130 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LDLRP01130 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LDLRP01130 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
LDLRP01130 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
LDLRP01130 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LDLRP01130 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
LDLRP01130 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LDLRP01130 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC15.4■□□□□ 0.06
LDLRP01130 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
LDLRP01130 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC15.4■□□□□ 0.06
LDLRP01130 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
LDLRP01130 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LDLRP01130 AC092919.2-201ENST00000623631 1645 ntBASIC15.4■□□□□ 0.06
LDLRP01130 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC15.4■□□□□ 0.06
LDLRP01130 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LDLRP01130 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC15.4■□□□□ 0.06
LDLRP01130 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
LDLRP01130 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC15.4■□□□□ 0.06
LDLRP01130 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
LDLRP01130 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
LDLRP01130 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LDLRP01130 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LDLRP01130 CXCL1P1-201ENST00000502804 216 ntBASIC15.4■□□□□ 0.06
LDLRP01130 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
LDLRP01130 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LDLRP01130 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LDLRP01130 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC15.4■□□□□ 0.06
LDLRP01130 RN7SL204P-201ENST00000582831 262 ntBASIC15.4■□□□□ 0.06
LDLRP01130 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LDLRP01130 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LDLRP01130 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC15.4■□□□□ 0.06
LDLRP01130 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LDLRP01130 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LDLRP01130 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LDLRP01130 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LDLRP01130 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LDLRP01130 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
LDLRP01130 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LDLRP01130 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LDLRP01130 AL109954.1-202ENST00000564051 2148 ntBASIC15.4■□□□□ 0.06
LDLRP01130 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LDLRP01130 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC15.39■□□□□ 0.05
LDLRP01130 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LDLRP01130 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LDLRP01130 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
LDLRP01130 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC15.39■□□□□ 0.05
LDLRP01130 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LDLRP01130 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
LDLRP01130 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
LDLRP01130 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
LDLRP01130 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LDLRP01130 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LDLRP01130 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LDLRP01130 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC15.39■□□□□ 0.05
LDLRP01130 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LDLRP01130 AC055876.3-201ENST00000431496 288 ntBASIC15.39■□□□□ 0.05
LDLRP01130 ADH5P3-201ENST00000433842 1137 ntBASIC15.39■□□□□ 0.05
LDLRP01130 AC007274.1-201ENST00000439805 662 ntBASIC15.39■□□□□ 0.05
LDLRP01130 CNN2P2-201ENST00000443536 909 ntBASIC15.39■□□□□ 0.05
LDLRP01130 CNN2P3-201ENST00000450201 906 ntBASIC15.39■□□□□ 0.05
LDLRP01130 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
LDLRP01130 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC15.39■□□□□ 0.05
LDLRP01130 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC15.39■□□□□ 0.05
LDLRP01130 NAA60-208ENST00000570819 833 ntTSL 2 BASIC15.39■□□□□ 0.05
LDLRP01130 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LDLRP01130 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC15.39■□□□□ 0.05
LDLRP01130 AC138649.4-201ENST00000612222 287 ntBASIC15.39■□□□□ 0.05
LDLRP01130 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC15.39■□□□□ 0.05
LDLRP01130 AL136317.3-201ENST00000618497 906 ntBASIC15.39■□□□□ 0.05
LDLRP01130 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
LDLRP01130 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LDLRP01130 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LDLRP01130 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms