Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC17.68■□□□□ 0.42
MSH4O15457 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
MSH4O15457 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC17.68■□□□□ 0.42
MSH4O15457 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
MSH4O15457 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MSH4O15457 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
MSH4O15457 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC17.68■□□□□ 0.42
MSH4O15457 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC17.68■□□□□ 0.42
MSH4O15457 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
MSH4O15457 CROCCP1-201ENST00000426910 5675 ntBASIC17.68■□□□□ 0.42
MSH4O15457 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC17.68■□□□□ 0.42
MSH4O15457 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
MSH4O15457 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
MSH4O15457 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MSH4O15457 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC17.67■□□□□ 0.42
MSH4O15457 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC17.67■□□□□ 0.42
MSH4O15457 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
MSH4O15457 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
MSH4O15457 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
MSH4O15457 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC17.67■□□□□ 0.42
MSH4O15457 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC17.67■□□□□ 0.42
MSH4O15457 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
MSH4O15457 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MSH4O15457 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MSH4O15457 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
MSH4O15457 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC17.67■□□□□ 0.42
MSH4O15457 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC17.67■□□□□ 0.42
MSH4O15457 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC17.67■□□□□ 0.42
MSH4O15457 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC17.67■□□□□ 0.42
MSH4O15457 AL596325.1-201ENST00000563991 1082 ntBASIC17.67■□□□□ 0.42
MSH4O15457 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
MSH4O15457 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
MSH4O15457 GPX4-206ENST00000588919 803 ntTSL 2 BASIC17.67■□□□□ 0.42
MSH4O15457 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC17.67■□□□□ 0.42
MSH4O15457 AC027307.3-201ENST00000594262 1100 ntBASIC17.67■□□□□ 0.42
MSH4O15457 TMEM261P1-201ENST00000604899 340 ntBASIC17.67■□□□□ 0.42
MSH4O15457 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC17.67■□□□□ 0.42
MSH4O15457 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
MSH4O15457 SRP9-204ENST00000619790 377 ntTSL 2 BASIC17.67■□□□□ 0.42
MSH4O15457 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
MSH4O15457 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC17.67■□□□□ 0.42
MSH4O15457 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MSH4O15457 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
MSH4O15457 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MSH4O15457 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
MSH4O15457 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC17.67■□□□□ 0.42
MSH4O15457 AC105250.1-201ENST00000509378 2057 ntBASIC17.67■□□□□ 0.42
MSH4O15457 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MSH4O15457 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
MSH4O15457 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
MSH4O15457 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC17.66■□□□□ 0.42
MSH4O15457 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
MSH4O15457 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
MSH4O15457 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC17.66■□□□□ 0.42
MSH4O15457 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
MSH4O15457 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
MSH4O15457 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
MSH4O15457 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
MSH4O15457 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
MSH4O15457 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
MSH4O15457 METTL26-204ENST00000397665 558 ntTSL 2 BASIC17.66■□□□□ 0.42
MSH4O15457 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
MSH4O15457 GALT-202ENST00000450095 1280 ntTSL 2 BASIC17.66■□□□□ 0.42
MSH4O15457 RN7SL692P-201ENST00000464677 288 ntBASIC17.66■□□□□ 0.42
MSH4O15457 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC17.66■□□□□ 0.42
MSH4O15457 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC17.66■□□□□ 0.42
MSH4O15457 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC17.66■□□□□ 0.42
MSH4O15457 AC092552.1-201ENST00000547243 906 ntBASIC17.66■□□□□ 0.42
MSH4O15457 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC17.66■□□□□ 0.42
MSH4O15457 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC17.66■□□□□ 0.42
MSH4O15457 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC17.66■□□□□ 0.42
MSH4O15457 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC17.66■□□□□ 0.42
MSH4O15457 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
MSH4O15457 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
MSH4O15457 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC17.66■□□□□ 0.42
MSH4O15457 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
MSH4O15457 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC17.66■□□□□ 0.42
MSH4O15457 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
MSH4O15457 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC17.66■□□□□ 0.42
MSH4O15457 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
MSH4O15457 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
MSH4O15457 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC17.66■□□□□ 0.42
MSH4O15457 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
MSH4O15457 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC17.66■□□□□ 0.42
MSH4O15457 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
MSH4O15457 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
MSH4O15457 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
MSH4O15457 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
MSH4O15457 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
MSH4O15457 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
MSH4O15457 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC17.65■□□□□ 0.42
MSH4O15457 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC17.65■□□□□ 0.42
MSH4O15457 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC17.65■□□□□ 0.42
MSH4O15457 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSH4O15457 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSH4O15457 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC17.65■□□□□ 0.42
MSH4O15457 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSH4O15457 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSH4O15457 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
MSH4O15457 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms