Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC20.92■□□□□ 0.94
CCDC9Q9Y3X0 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC9Q9Y3X0 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
CCDC9Q9Y3X0 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC9Q9Y3X0 GCK-202ENST00000345378 2421 ntTSL 2 BASIC20.92■□□□□ 0.94
CCDC9Q9Y3X0 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC9Q9Y3X0 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC20.92■□□□□ 0.94
CCDC9Q9Y3X0 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC20.92■□□□□ 0.94
CCDC9Q9Y3X0 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC20.92■□□□□ 0.94
CCDC9Q9Y3X0 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
CCDC9Q9Y3X0 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC9Q9Y3X0 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC20.92■□□□□ 0.94
CCDC9Q9Y3X0 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC20.92■□□□□ 0.94
CCDC9Q9Y3X0 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
CCDC9Q9Y3X0 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC20.92■□□□□ 0.94
CCDC9Q9Y3X0 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC20.92■□□□□ 0.94
CCDC9Q9Y3X0 MIR3907-201ENST00000579424 151 ntBASIC20.92■□□□□ 0.94
CCDC9Q9Y3X0 MIR4750-201ENST00000584564 56 ntBASIC20.92■□□□□ 0.94
CCDC9Q9Y3X0 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC20.92■□□□□ 0.94
CCDC9Q9Y3X0 AP005019.2-201ENST00000615104 511 ntBASIC20.92■□□□□ 0.94
CCDC9Q9Y3X0 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC20.92■□□□□ 0.94
CCDC9Q9Y3X0 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC9Q9Y3X0 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC9Q9Y3X0 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
CCDC9Q9Y3X0 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
CCDC9Q9Y3X0 AL121723.1-201ENST00000445194 1519 ntBASIC20.92■□□□□ 0.94
CCDC9Q9Y3X0 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC20.92■□□□□ 0.94
CCDC9Q9Y3X0 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC9Q9Y3X0 AL138709.1-201ENST00000614840 1693 ntBASIC20.92■□□□□ 0.94
CCDC9Q9Y3X0 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC9Q9Y3X0 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC9Q9Y3X0 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC9Q9Y3X0 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC20.92■□□□□ 0.94
CCDC9Q9Y3X0 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC9Q9Y3X0 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC9Q9Y3X0 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC20.91■□□□□ 0.94
CCDC9Q9Y3X0 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC9Q9Y3X0 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC9Q9Y3X0 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC20.91■□□□□ 0.94
CCDC9Q9Y3X0 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC9Q9Y3X0 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC9Q9Y3X0 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC20.91■□□□□ 0.94
CCDC9Q9Y3X0 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC20.91■□□□□ 0.94
CCDC9Q9Y3X0 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC9Q9Y3X0 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC20.91■□□□□ 0.94
CCDC9Q9Y3X0 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC20.91■□□□□ 0.94
CCDC9Q9Y3X0 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC9Q9Y3X0 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC9Q9Y3X0 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC20.91■□□□□ 0.94
CCDC9Q9Y3X0 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC20.91■□□□□ 0.94
CCDC9Q9Y3X0 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC20.91■□□□□ 0.94
CCDC9Q9Y3X0 RN7SL11P-201ENST00000471305 293 ntBASIC20.91■□□□□ 0.94
CCDC9Q9Y3X0 KRT8P35-201ENST00000483942 1338 ntBASIC20.91■□□□□ 0.94
CCDC9Q9Y3X0 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC9Q9Y3X0 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC9Q9Y3X0 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC20.91■□□□□ 0.94
CCDC9Q9Y3X0 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC20.91■□□□□ 0.94
CCDC9Q9Y3X0 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC9Q9Y3X0 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC20.91■□□□□ 0.94
CCDC9Q9Y3X0 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC20.91■□□□□ 0.94
CCDC9Q9Y3X0 AL603756.1-201ENST00000606511 2163 ntBASIC20.91■□□□□ 0.94
CCDC9Q9Y3X0 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
CCDC9Q9Y3X0 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC20.91■□□□□ 0.94
CCDC9Q9Y3X0 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC20.91■□□□□ 0.94
CCDC9Q9Y3X0 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC9Q9Y3X0 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC9Q9Y3X0 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
CCDC9Q9Y3X0 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC9Q9Y3X0 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC20.9■□□□□ 0.94
CCDC9Q9Y3X0 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC20.9■□□□□ 0.94
CCDC9Q9Y3X0 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC9Q9Y3X0 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC9Q9Y3X0 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC20.9■□□□□ 0.94
CCDC9Q9Y3X0 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC9Q9Y3X0 FOS-202ENST00000535987 1402 ntTSL 2 BASIC20.9■□□□□ 0.94
CCDC9Q9Y3X0 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC9Q9Y3X0 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC9Q9Y3X0 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
CCDC9Q9Y3X0 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC9Q9Y3X0 AC016700.1-201ENST00000429424 312 ntBASIC20.9■□□□□ 0.94
CCDC9Q9Y3X0 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC20.9■□□□□ 0.94
CCDC9Q9Y3X0 KRT18P43-201ENST00000469825 1281 ntBASIC20.9■□□□□ 0.94
CCDC9Q9Y3X0 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC20.9■□□□□ 0.94
CCDC9Q9Y3X0 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC20.9■□□□□ 0.94
CCDC9Q9Y3X0 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC20.9■□□□□ 0.94
CCDC9Q9Y3X0 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC20.9■□□□□ 0.94
CCDC9Q9Y3X0 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC9Q9Y3X0 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC9Q9Y3X0 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC20.9■□□□□ 0.94
CCDC9Q9Y3X0 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC9Q9Y3X0 AC009053.2-201ENST00000563701 2365 ntBASIC20.9■□□□□ 0.94
CCDC9Q9Y3X0 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC9Q9Y3X0 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC9Q9Y3X0 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC9Q9Y3X0 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC9Q9Y3X0 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC9Q9Y3X0 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
CCDC9Q9Y3X0 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC9Q9Y3X0 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.94
CCDC9Q9Y3X0 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 70 ms