Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 API5-202ENST00000420461 2009 ntTSL 2 BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 AC138035.3-201ENST00000622706 2791 ntBASIC12.86□□□□□ -0.35
FOXA2Q9Y261 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 PP14571-201ENST00000404327 934 ntTSL 2 BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 AC004461.1-201ENST00000412461 403 ntBASIC12.86□□□□□ -0.35
FOXA2Q9Y261 KRT18P32-201ENST00000424695 1287 ntBASIC12.86□□□□□ -0.35
FOXA2Q9Y261 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 AL138918.1-201ENST00000568306 659 ntBASIC12.86□□□□□ -0.35
FOXA2Q9Y261 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 NKG7-205ENST00000600427 520 ntTSL 3 BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 AL596442.2-201ENST00000610240 980 ntBASIC12.86□□□□□ -0.35
FOXA2Q9Y261 AC139530.3-201ENST00000620344 690 ntBASIC12.86□□□□□ -0.35
FOXA2Q9Y261 AC055717.3-201ENST00000622967 595 ntBASIC12.86□□□□□ -0.35
FOXA2Q9Y261 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 TNRC18P2-201ENST00000417666 2714 ntBASIC12.86□□□□□ -0.35
FOXA2Q9Y261 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC12.86□□□□□ -0.35
FOXA2Q9Y261 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 ZBTB45P2-201ENST00000452245 1531 ntBASIC12.85□□□□□ -0.35
FOXA2Q9Y261 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 PTMS-202ENST00000389462 773 ntTSL 2 BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 AL627223.1-201ENST00000416693 442 ntBASIC12.85□□□□□ -0.35
FOXA2Q9Y261 RPS8P6-201ENST00000426177 609 ntBASIC12.85□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms