Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 RAC2-204ENST00000406508 893 ntTSL 5 BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 AZGP1P1-201ENST00000411909 902 ntBASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM39Q9HCM9 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
TRIM39Q9HCM9 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
TRIM39Q9HCM9 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TRIM39Q9HCM9 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
TRIM39Q9HCM9 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC15.77■□□□□ 0.11
TRIM39Q9HCM9 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC15.77■□□□□ 0.11
TRIM39Q9HCM9 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC15.77■□□□□ 0.11
TRIM39Q9HCM9 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TRIM39Q9HCM9 BANP-201ENST00000286122 2368 ntTSL 5 BASIC15.77■□□□□ 0.11
TRIM39Q9HCM9 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
TRIM39Q9HCM9 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TRIM39Q9HCM9 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.11
TRIM39Q9HCM9 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC15.77■□□□□ 0.11
TRIM39Q9HCM9 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 AC044860.1-202ENST00000559481 777 ntBASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 MIR4745-201ENST00000577608 62 ntBASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 AL450472.2-201ENST00000603663 1156 ntBASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 AL513523.2-202ENST00000427283 2040 ntBASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 LINC02447-202ENST00000501888 2146 ntBASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
TRIM39Q9HCM9 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms