Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC13.92□□□□□ -0.18
NKX3-1Q99801 RPL28-209ENST00000560055 670 ntTSL 3 BASIC13.92□□□□□ -0.18
NKX3-1Q99801 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC13.92□□□□□ -0.18
NKX3-1Q99801 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC13.92□□□□□ -0.18
NKX3-1Q99801 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
NKX3-1Q99801 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC13.92□□□□□ -0.18
NKX3-1Q99801 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC13.92□□□□□ -0.18
NKX3-1Q99801 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC13.92□□□□□ -0.18
NKX3-1Q99801 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX3-1Q99801 LRRFIP1P1-201ENST00000498774 2246 ntBASIC13.92□□□□□ -0.18
NKX3-1Q99801 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC13.92□□□□□ -0.18
NKX3-1Q99801 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC13.92□□□□□ -0.18
NKX3-1Q99801 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC13.92□□□□□ -0.18
NKX3-1Q99801 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC13.92□□□□□ -0.18
NKX3-1Q99801 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC13.92□□□□□ -0.18
NKX3-1Q99801 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX3-1Q99801 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX3-1Q99801 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX3-1Q99801 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX3-1Q99801 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NKX3-1Q99801 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC13.92□□□□□ -0.18
NKX3-1Q99801 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC13.92□□□□□ -0.18
NKX3-1Q99801 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
NKX3-1Q99801 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX3-1Q99801 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
NKX3-1Q99801 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC13.91□□□□□ -0.18
NKX3-1Q99801 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX3-1Q99801 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
NKX3-1Q99801 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX3-1Q99801 AC073439.1-201ENST00000624121 1774 ntBASIC13.91□□□□□ -0.18
NKX3-1Q99801 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC13.91□□□□□ -0.18
NKX3-1Q99801 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX3-1Q99801 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX3-1Q99801 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX3-1Q99801 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC13.91□□□□□ -0.18
NKX3-1Q99801 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX3-1Q99801 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
NKX3-1Q99801 TCAF2P1-201ENST00000291129 2421 ntBASIC13.91□□□□□ -0.18
NKX3-1Q99801 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX3-1Q99801 AC105250.1-201ENST00000509378 2057 ntBASIC13.91□□□□□ -0.18
NKX3-1Q99801 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC13.91□□□□□ -0.18
NKX3-1Q99801 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX3-1Q99801 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC13.91□□□□□ -0.18
NKX3-1Q99801 PMS2P4-201ENST00000412466 1052 ntBASIC13.91□□□□□ -0.18
NKX3-1Q99801 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC13.91□□□□□ -0.18
NKX3-1Q99801 VN2R19P-201ENST00000442399 1052 ntBASIC13.91□□□□□ -0.18
NKX3-1Q99801 AC009947.1-201ENST00000444350 727 ntBASIC13.91□□□□□ -0.18
NKX3-1Q99801 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
NKX3-1Q99801 AC106730.1-201ENST00000566722 1090 ntBASIC13.91□□□□□ -0.18
NKX3-1Q99801 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX3-1Q99801 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC13.91□□□□□ -0.18
NKX3-1Q99801 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX3-1Q99801 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX3-1Q99801 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX3-1Q99801 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX3-1Q99801 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX3-1Q99801 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX3-1Q99801 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX3-1Q99801 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC13.91□□□□□ -0.18
NKX3-1Q99801 TK2-221ENST00000620035 5060 ntTSL 2 BASIC13.91□□□□□ -0.18
NKX3-1Q99801 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX3-1Q99801 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC13.91□□□□□ -0.18
NKX3-1Q99801 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX3-1Q99801 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
NKX3-1Q99801 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
NKX3-1Q99801 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
NKX3-1Q99801 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
NKX3-1Q99801 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC13.91□□□□□ -0.18
NKX3-1Q99801 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX3-1Q99801 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX3-1Q99801 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
NKX3-1Q99801 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC13.91□□□□□ -0.18
NKX3-1Q99801 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
NKX3-1Q99801 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX3-1Q99801 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
NKX3-1Q99801 AC139749.1-202ENST00000617529 3139 ntBASIC13.9□□□□□ -0.18
NKX3-1Q99801 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX3-1Q99801 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX3-1Q99801 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
NKX3-1Q99801 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX3-1Q99801 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC13.9□□□□□ -0.18
NKX3-1Q99801 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC13.9□□□□□ -0.18
NKX3-1Q99801 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC13.9□□□□□ -0.18
NKX3-1Q99801 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC13.9□□□□□ -0.18
NKX3-1Q99801 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC13.9□□□□□ -0.18
NKX3-1Q99801 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
NKX3-1Q99801 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX3-1Q99801 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX3-1Q99801 TMBIM7P-203ENST00000641617 1718 ntBASIC13.9□□□□□ -0.18
NKX3-1Q99801 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX3-1Q99801 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX3-1Q99801 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX3-1Q99801 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC13.9□□□□□ -0.18
NKX3-1Q99801 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX3-1Q99801 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NKX3-1Q99801 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
NKX3-1Q99801 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
NKX3-1Q99801 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
NKX3-1Q99801 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC13.9□□□□□ -0.18
NKX3-1Q99801 MIR574-201ENST00000385209 96 ntBASIC13.9□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms