Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC21.16■□□□□ 0.98
NPHP3Q7Z494 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC21.16■□□□□ 0.98
NPHP3Q7Z494 NUP210P1-202ENST00000504322 710 ntBASIC21.16■□□□□ 0.98
NPHP3Q7Z494 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC21.16■□□□□ 0.98
NPHP3Q7Z494 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC21.16■□□□□ 0.98
NPHP3Q7Z494 RN7SL713P-201ENST00000582127 302 ntBASIC21.16■□□□□ 0.98
NPHP3Q7Z494 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP3Q7Z494 AL133499.1-201ENST00000596207 608 ntBASIC21.16■□□□□ 0.98
NPHP3Q7Z494 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC21.16■□□□□ 0.98
NPHP3Q7Z494 AC100757.4-201ENST00000626934 759 ntBASIC21.16■□□□□ 0.98
NPHP3Q7Z494 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP3Q7Z494 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP3Q7Z494 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP3Q7Z494 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP3Q7Z494 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
NPHP3Q7Z494 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC21.16■□□□□ 0.98
NPHP3Q7Z494 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP3Q7Z494 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP3Q7Z494 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
NPHP3Q7Z494 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP3Q7Z494 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP3Q7Z494 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP3Q7Z494 ANKRD30BP2-201ENST00000435744 1610 ntBASIC21.16■□□□□ 0.98
NPHP3Q7Z494 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP3Q7Z494 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC21.15■□□□□ 0.98
NPHP3Q7Z494 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC21.15■□□□□ 0.98
NPHP3Q7Z494 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP3Q7Z494 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC21.15■□□□□ 0.98
NPHP3Q7Z494 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP3Q7Z494 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP3Q7Z494 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC21.15■□□□□ 0.98
NPHP3Q7Z494 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC21.15■□□□□ 0.98
NPHP3Q7Z494 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP3Q7Z494 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP3Q7Z494 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC21.15■□□□□ 0.98
NPHP3Q7Z494 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
NPHP3Q7Z494 AL354877.1-201ENST00000424412 413 ntBASIC21.15■□□□□ 0.98
NPHP3Q7Z494 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP3Q7Z494 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC21.15■□□□□ 0.98
NPHP3Q7Z494 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP3Q7Z494 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC21.15■□□□□ 0.98
NPHP3Q7Z494 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC21.15■□□□□ 0.98
NPHP3Q7Z494 AC073413.1-201ENST00000603927 732 ntBASIC21.15■□□□□ 0.98
NPHP3Q7Z494 ZACNP1-201ENST00000612259 710 ntBASIC21.15■□□□□ 0.98
NPHP3Q7Z494 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP3Q7Z494 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP3Q7Z494 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP3Q7Z494 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
NPHP3Q7Z494 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC21.15■□□□□ 0.98
NPHP3Q7Z494 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP3Q7Z494 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP3Q7Z494 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC21.15■□□□□ 0.98
NPHP3Q7Z494 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP3Q7Z494 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
NPHP3Q7Z494 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP3Q7Z494 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC21.15■□□□□ 0.98
NPHP3Q7Z494 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC21.15■□□□□ 0.98
NPHP3Q7Z494 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
NPHP3Q7Z494 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
NPHP3Q7Z494 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
NPHP3Q7Z494 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC21.14■□□□□ 0.98
NPHP3Q7Z494 LRRC59-203ENST00000576448 1531 ntBASIC21.14■□□□□ 0.98
NPHP3Q7Z494 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC21.14■□□□□ 0.98
NPHP3Q7Z494 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
NPHP3Q7Z494 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
NPHP3Q7Z494 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
NPHP3Q7Z494 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NPHP3Q7Z494 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC21.14■□□□□ 0.97
NPHP3Q7Z494 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
NPHP3Q7Z494 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
NPHP3Q7Z494 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC21.14■□□□□ 0.97
NPHP3Q7Z494 RGS5-214ENST00000429865 754 ntTSL 3 BASIC21.14■□□□□ 0.97
NPHP3Q7Z494 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC21.14■□□□□ 0.97
NPHP3Q7Z494 OARD1-204ENST00000464633 717 ntTSL 2 BASIC21.14■□□□□ 0.97
NPHP3Q7Z494 AC005740.2-201ENST00000511085 419 ntBASIC21.14■□□□□ 0.97
NPHP3Q7Z494 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC21.14■□□□□ 0.97
NPHP3Q7Z494 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC21.14■□□□□ 0.97
NPHP3Q7Z494 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC21.14■□□□□ 0.97
NPHP3Q7Z494 AP003419.4-201ENST00000616071 517 ntBASIC21.14■□□□□ 0.97
NPHP3Q7Z494 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NPHP3Q7Z494 AC006480.2-201ENST00000609770 1337 ntBASIC21.14■□□□□ 0.97
NPHP3Q7Z494 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NPHP3Q7Z494 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
NPHP3Q7Z494 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC21.14■□□□□ 0.97
NPHP3Q7Z494 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NPHP3Q7Z494 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NPHP3Q7Z494 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NPHP3Q7Z494 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
NPHP3Q7Z494 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NPHP3Q7Z494 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC21.14■□□□□ 0.97
NPHP3Q7Z494 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP3Q7Z494 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
NPHP3Q7Z494 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP3Q7Z494 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
NPHP3Q7Z494 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP3Q7Z494 RPS15-201ENST00000233609 534 ntTSL 2 BASIC21.13■□□□□ 0.97
NPHP3Q7Z494 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP3Q7Z494 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP3Q7Z494 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
NPHP3Q7Z494 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms