Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
KRT28Q7Z3Y7 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC21.1■□□□□ 0.97
KRT28Q7Z3Y7 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
KRT28Q7Z3Y7 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
KRT28Q7Z3Y7 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC21.1■□□□□ 0.97
KRT28Q7Z3Y7 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC21.1■□□□□ 0.97
KRT28Q7Z3Y7 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
KRT28Q7Z3Y7 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
KRT28Q7Z3Y7 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
KRT28Q7Z3Y7 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
KRT28Q7Z3Y7 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
KRT28Q7Z3Y7 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
KRT28Q7Z3Y7 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
KRT28Q7Z3Y7 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
KRT28Q7Z3Y7 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
KRT28Q7Z3Y7 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC21.09■□□□□ 0.97
KRT28Q7Z3Y7 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
KRT28Q7Z3Y7 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
KRT28Q7Z3Y7 NDUFAB1P1-201ENST00000404262 460 ntBASIC21.09■□□□□ 0.97
KRT28Q7Z3Y7 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC21.09■□□□□ 0.97
KRT28Q7Z3Y7 MBP-227ENST00000526111 581 ntTSL 4 BASIC21.09■□□□□ 0.97
KRT28Q7Z3Y7 RN7SL574P-201ENST00000581512 297 ntBASIC21.09■□□□□ 0.97
KRT28Q7Z3Y7 MIR7845-201ENST00000618396 99 ntBASIC21.09■□□□□ 0.97
KRT28Q7Z3Y7 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC21.09■□□□□ 0.97
KRT28Q7Z3Y7 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
KRT28Q7Z3Y7 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
KRT28Q7Z3Y7 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
KRT28Q7Z3Y7 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
KRT28Q7Z3Y7 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
KRT28Q7Z3Y7 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
KRT28Q7Z3Y7 LRRC59-203ENST00000576448 1531 ntBASIC21.09■□□□□ 0.97
KRT28Q7Z3Y7 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
KRT28Q7Z3Y7 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
KRT28Q7Z3Y7 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
KRT28Q7Z3Y7 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
KRT28Q7Z3Y7 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC21.08■□□□□ 0.97
KRT28Q7Z3Y7 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
KRT28Q7Z3Y7 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
KRT28Q7Z3Y7 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
KRT28Q7Z3Y7 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
KRT28Q7Z3Y7 IGF1-203ENST00000392904 761 ntTSL 5 BASIC21.08■□□□□ 0.97
KRT28Q7Z3Y7 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC21.08■□□□□ 0.97
KRT28Q7Z3Y7 MAGEA5-201ENST00000446757 942 ntBASIC21.08■□□□□ 0.97
KRT28Q7Z3Y7 FTLP1-201ENST00000449155 526 ntBASIC21.08■□□□□ 0.97
KRT28Q7Z3Y7 RN7SL11P-201ENST00000471305 293 ntBASIC21.08■□□□□ 0.97
KRT28Q7Z3Y7 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC21.08■□□□□ 0.97
KRT28Q7Z3Y7 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC21.08■□□□□ 0.97
KRT28Q7Z3Y7 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC21.08■□□□□ 0.97
KRT28Q7Z3Y7 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC21.08■□□□□ 0.97
KRT28Q7Z3Y7 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC21.08■□□□□ 0.97
KRT28Q7Z3Y7 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC21.08■□□□□ 0.97
KRT28Q7Z3Y7 AL133499.1-201ENST00000596207 608 ntBASIC21.08■□□□□ 0.97
KRT28Q7Z3Y7 AC025181.2-201ENST00000606994 802 ntBASIC21.08■□□□□ 0.97
KRT28Q7Z3Y7 AC079336.7-201ENST00000623428 1078 ntBASIC21.08■□□□□ 0.97
KRT28Q7Z3Y7 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
KRT28Q7Z3Y7 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC21.08■□□□□ 0.96
KRT28Q7Z3Y7 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
KRT28Q7Z3Y7 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
KRT28Q7Z3Y7 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
KRT28Q7Z3Y7 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
KRT28Q7Z3Y7 MFF-204ENST00000353339 2186 ntTSL 5 BASIC21.07■□□□□ 0.96
KRT28Q7Z3Y7 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
KRT28Q7Z3Y7 AC092171.3-201ENST00000610122 2651 ntBASIC21.07■□□□□ 0.96
KRT28Q7Z3Y7 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
KRT28Q7Z3Y7 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
KRT28Q7Z3Y7 RPS15-201ENST00000233609 534 ntTSL 2 BASIC21.07■□□□□ 0.96
KRT28Q7Z3Y7 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
KRT28Q7Z3Y7 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
KRT28Q7Z3Y7 CRCP-204ENST00000398684 492 ntTSL 2 BASIC21.07■□□□□ 0.96
KRT28Q7Z3Y7 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC21.07■□□□□ 0.96
KRT28Q7Z3Y7 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
KRT28Q7Z3Y7 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
KRT28Q7Z3Y7 Z97180.1-201ENST00000445173 988 ntBASIC21.07■□□□□ 0.96
KRT28Q7Z3Y7 AC022217.1-201ENST00000521069 738 ntBASIC21.07■□□□□ 0.96
KRT28Q7Z3Y7 EHF-205ENST00000527935 557 ntTSL 2 BASIC21.07■□□□□ 0.96
KRT28Q7Z3Y7 RN7SL713P-201ENST00000582127 302 ntBASIC21.07■□□□□ 0.96
KRT28Q7Z3Y7 RPS15-205ENST00000586686 562 ntTSL 5 BASIC21.07■□□□□ 0.96
KRT28Q7Z3Y7 RPS15-208ENST00000591804 711 ntTSL 5 BASIC21.07■□□□□ 0.96
KRT28Q7Z3Y7 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
KRT28Q7Z3Y7 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
KRT28Q7Z3Y7 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC21.07■□□□□ 0.96
KRT28Q7Z3Y7 AC073413.1-201ENST00000603927 732 ntBASIC21.07■□□□□ 0.96
KRT28Q7Z3Y7 AL645939.5-201ENST00000606834 243 ntBASIC21.07■□□□□ 0.96
KRT28Q7Z3Y7 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
KRT28Q7Z3Y7 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
KRT28Q7Z3Y7 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
KRT28Q7Z3Y7 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
KRT28Q7Z3Y7 ANKRD30BP2-201ENST00000435744 1610 ntBASIC21.07■□□□□ 0.96
KRT28Q7Z3Y7 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC21.07■□□□□ 0.96
KRT28Q7Z3Y7 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC21.07■□□□□ 0.96
KRT28Q7Z3Y7 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
KRT28Q7Z3Y7 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC21.07■□□□□ 0.96
KRT28Q7Z3Y7 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC21.07■□□□□ 0.96
KRT28Q7Z3Y7 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC21.07■□□□□ 0.96
KRT28Q7Z3Y7 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
KRT28Q7Z3Y7 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
KRT28Q7Z3Y7 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC21.06■□□□□ 0.96
KRT28Q7Z3Y7 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
KRT28Q7Z3Y7 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC21.06■□□□□ 0.96
KRT28Q7Z3Y7 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms