Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LMO4P61968 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LMO4P61968 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
LMO4P61968 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
LMO4P61968 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
LMO4P61968 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC12.91□□□□□ -0.34
LMO4P61968 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
LMO4P61968 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
LMO4P61968 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
LMO4P61968 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
LMO4P61968 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC12.91□□□□□ -0.34
LMO4P61968 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
LMO4P61968 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
LMO4P61968 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC12.91□□□□□ -0.34
LMO4P61968 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC12.91□□□□□ -0.34
LMO4P61968 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
LMO4P61968 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC12.91□□□□□ -0.34
LMO4P61968 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
LMO4P61968 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
LMO4P61968 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LMO4P61968 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC12.91□□□□□ -0.34
LMO4P61968 GZMB-202ENST00000382540 816 ntTSL 5 BASIC12.91□□□□□ -0.34
LMO4P61968 USB1-202ENST00000423271 1217 ntTSL 2 BASIC12.91□□□□□ -0.34
LMO4P61968 RPL7P3-201ENST00000441388 714 ntBASIC12.91□□□□□ -0.34
LMO4P61968 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC12.91□□□□□ -0.34
LMO4P61968 BNIP3P42-201ENST00000454982 569 ntBASIC12.91□□□□□ -0.34
LMO4P61968 AC007551.1-201ENST00000457394 519 ntBASIC12.91□□□□□ -0.34
LMO4P61968 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC12.91□□□□□ -0.34
LMO4P61968 MFF-223ENST00000524634 647 ntTSL 2 BASIC12.91□□□□□ -0.34
LMO4P61968 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC12.91□□□□□ -0.34
LMO4P61968 AP000812.2-201ENST00000538934 718 ntBASIC12.91□□□□□ -0.34
LMO4P61968 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC12.91□□□□□ -0.34
LMO4P61968 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC12.91□□□□□ -0.34
LMO4P61968 BNIP3P29-201ENST00000598302 571 ntBASIC12.91□□□□□ -0.34
LMO4P61968 AC011447.5-201ENST00000616168 564 ntBASIC12.91□□□□□ -0.34
LMO4P61968 AL033527.4-201ENST00000641026 673 ntBASIC12.91□□□□□ -0.34
LMO4P61968 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC12.91□□□□□ -0.34
LMO4P61968 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC12.91□□□□□ -0.34
LMO4P61968 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LMO4P61968 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC12.91□□□□□ -0.34
LMO4P61968 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
LMO4P61968 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LMO4P61968 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LMO4P61968 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
LMO4P61968 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LMO4P61968 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
LMO4P61968 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC12.91□□□□□ -0.34
LMO4P61968 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
LMO4P61968 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LMO4P61968 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC12.91□□□□□ -0.34
LMO4P61968 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC12.91□□□□□ -0.34
LMO4P61968 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
LMO4P61968 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
LMO4P61968 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC12.9□□□□□ -0.34
LMO4P61968 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
LMO4P61968 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
LMO4P61968 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
LMO4P61968 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
LMO4P61968 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
LMO4P61968 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
LMO4P61968 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
LMO4P61968 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
LMO4P61968 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
LMO4P61968 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC12.9□□□□□ -0.34
LMO4P61968 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
LMO4P61968 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
LMO4P61968 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
LMO4P61968 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC12.9□□□□□ -0.34
LMO4P61968 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
LMO4P61968 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
LMO4P61968 MPV17-208ENST00000405076 603 ntTSL 5 BASIC12.9□□□□□ -0.34
LMO4P61968 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC12.9□□□□□ -0.34
LMO4P61968 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC12.9□□□□□ -0.34
LMO4P61968 AC022137.2-201ENST00000503482 481 ntBASIC12.9□□□□□ -0.34
LMO4P61968 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC12.9□□□□□ -0.34
LMO4P61968 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC12.9□□□□□ -0.34
LMO4P61968 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
LMO4P61968 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
LMO4P61968 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC12.9□□□□□ -0.34
LMO4P61968 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC12.9□□□□□ -0.34
LMO4P61968 TBCB-211ENST00000589996 724 ntTSL 3 BASIC12.9□□□□□ -0.34
LMO4P61968 UBL5-208ENST00000593087 320 ntTSL 3 BASIC12.9□□□□□ -0.34
LMO4P61968 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC12.9□□□□□ -0.34
LMO4P61968 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
LMO4P61968 HADH-212ENST00000638621 741 ntTSL 5 BASIC12.9□□□□□ -0.34
LMO4P61968 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
LMO4P61968 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
LMO4P61968 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
LMO4P61968 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
LMO4P61968 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
LMO4P61968 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC12.9□□□□□ -0.34
LMO4P61968 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC12.9□□□□□ -0.34
LMO4P61968 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
LMO4P61968 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
LMO4P61968 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
LMO4P61968 AC112504.1-201ENST00000623415 1841 ntBASIC12.9□□□□□ -0.34
LMO4P61968 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
LMO4P61968 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC12.9□□□□□ -0.35
LMO4P61968 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
LMO4P61968 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms