Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC20.57■□□□□ 0.88
COL3A1P02461 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC20.57■□□□□ 0.88
COL3A1P02461 AC009486.1-201ENST00000569860 813 ntBASIC20.57■□□□□ 0.88
COL3A1P02461 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
COL3A1P02461 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC20.57■□□□□ 0.88
COL3A1P02461 BTNL10-201ENST00000595971 695 ntBASIC20.57■□□□□ 0.88
COL3A1P02461 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC20.57■□□□□ 0.88
COL3A1P02461 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL3A1P02461 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC20.57■□□□□ 0.88
COL3A1P02461 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC20.57■□□□□ 0.88
COL3A1P02461 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
COL3A1P02461 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL3A1P02461 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL3A1P02461 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL3A1P02461 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL3A1P02461 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC20.57■□□□□ 0.88
COL3A1P02461 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL3A1P02461 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL3A1P02461 AC007787.1-201ENST00000588095 1583 ntBASIC20.57■□□□□ 0.88
COL3A1P02461 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL3A1P02461 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC20.57■□□□□ 0.88
COL3A1P02461 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL3A1P02461 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC20.56■□□□□ 0.88
COL3A1P02461 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL3A1P02461 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL3A1P02461 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC20.56■□□□□ 0.88
COL3A1P02461 EIF3FP3-201ENST00000434851 1086 ntBASIC20.56■□□□□ 0.88
COL3A1P02461 RAB43P1-201ENST00000561790 589 ntBASIC20.56■□□□□ 0.88
COL3A1P02461 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC20.56■□□□□ 0.88
COL3A1P02461 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
COL3A1P02461 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL3A1P02461 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC20.56■□□□□ 0.88
COL3A1P02461 AL158070.2-201ENST00000623713 1621 ntBASIC20.56■□□□□ 0.88
COL3A1P02461 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
COL3A1P02461 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL3A1P02461 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC20.56■□□□□ 0.88
COL3A1P02461 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL3A1P02461 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
COL3A1P02461 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC20.56■□□□□ 0.88
COL3A1P02461 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
COL3A1P02461 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL3A1P02461 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL3A1P02461 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
COL3A1P02461 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
COL3A1P02461 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
COL3A1P02461 KLF2P2-201ENST00000416807 1039 ntBASIC20.56■□□□□ 0.88
COL3A1P02461 AC007274.1-201ENST00000439805 662 ntBASIC20.56■□□□□ 0.88
COL3A1P02461 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC20.56■□□□□ 0.88
COL3A1P02461 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC20.56■□□□□ 0.88
COL3A1P02461 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL3A1P02461 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC20.56■□□□□ 0.88
COL3A1P02461 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL3A1P02461 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC20.56■□□□□ 0.88
COL3A1P02461 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL3A1P02461 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC20.56■□□□□ 0.88
COL3A1P02461 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL3A1P02461 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL3A1P02461 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC20.55■□□□□ 0.88
COL3A1P02461 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL3A1P02461 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL3A1P02461 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL3A1P02461 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
COL3A1P02461 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC20.55■□□□□ 0.88
COL3A1P02461 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
COL3A1P02461 KRT8P14-201ENST00000414254 1442 ntBASIC20.55■□□□□ 0.88
COL3A1P02461 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
COL3A1P02461 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
COL3A1P02461 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL3A1P02461 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC20.55■□□□□ 0.88
COL3A1P02461 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL3A1P02461 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL3A1P02461 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL3A1P02461 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL3A1P02461 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
COL3A1P02461 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
COL3A1P02461 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC20.55■□□□□ 0.88
COL3A1P02461 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
COL3A1P02461 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC20.55■□□□□ 0.88
COL3A1P02461 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
COL3A1P02461 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC20.55■□□□□ 0.88
COL3A1P02461 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
COL3A1P02461 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
COL3A1P02461 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC20.55■□□□□ 0.88
COL3A1P02461 AC134312.5-201ENST00000568031 1313 ntBASIC20.55■□□□□ 0.88
COL3A1P02461 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC20.54■□□□□ 0.88
COL3A1P02461 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL3A1P02461 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL3A1P02461 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC20.54■□□□□ 0.88
COL3A1P02461 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC20.54■□□□□ 0.88
COL3A1P02461 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL3A1P02461 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC20.54■□□□□ 0.88
COL3A1P02461 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL3A1P02461 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC20.54■□□□□ 0.88
COL3A1P02461 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL3A1P02461 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL3A1P02461 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL3A1P02461 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL3A1P02461 PGGT1BP2-201ENST00000398621 1028 ntBASIC20.54■□□□□ 0.88
COL3A1P02461 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
COL3A1P02461 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms