Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 CNN2P8-201ENST00000421872 913 ntBASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 AC106760.1-201ENST00000508690 800 ntBASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 ATF5-205ENST00000600336 682 ntTSL 2 BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 ZBTB45P2-201ENST00000452245 1531 ntBASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 BNIP3P1-202ENST00000550043 1585 ntBASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 C2orf69P2-201ENST00000562032 1123 ntBASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 ARL16-210ENST00000574938 751 ntTSL 2 BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 AL022328.3-201ENST00000607943 679 ntBASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 AC244669.2-201ENST00000612320 853 ntBASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 AGER-206ENST00000375070 1463 ntTSL 5 BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PCDHGA1Q9Y5H4 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 110.4 ms