Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MMP28Q9H239 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MMP28Q9H239 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MMP28Q9H239 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
MMP28Q9H239 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MMP28Q9H239 PAN3-AS1-201ENST00000563843 1351 ntBASIC14.12□□□□□ -0.15
MMP28Q9H239 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
MMP28Q9H239 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC14.12□□□□□ -0.15
MMP28Q9H239 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC14.12□□□□□ -0.15
MMP28Q9H239 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
MMP28Q9H239 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC14.12□□□□□ -0.15
MMP28Q9H239 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC14.12□□□□□ -0.15
MMP28Q9H239 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MMP28Q9H239 AGAP7P-201ENST00000582299 2062 ntBASIC14.12□□□□□ -0.15
MMP28Q9H239 AGAP14-201ENST00000624701 2060 ntBASIC14.12□□□□□ -0.15
MMP28Q9H239 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
MMP28Q9H239 MRPL3P1-201ENST00000400109 1033 ntBASIC14.12□□□□□ -0.15
MMP28Q9H239 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC14.12□□□□□ -0.15
MMP28Q9H239 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
MMP28Q9H239 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MMP28Q9H239 POU5F1P6-201ENST00000466990 990 ntBASIC14.12□□□□□ -0.15
MMP28Q9H239 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
MMP28Q9H239 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC14.12□□□□□ -0.15
MMP28Q9H239 AL662844.1-201ENST00000546340 181 ntBASIC14.12□□□□□ -0.15
MMP28Q9H239 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
MMP28Q9H239 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC14.12□□□□□ -0.15
MMP28Q9H239 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC14.12□□□□□ -0.15
MMP28Q9H239 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC14.12□□□□□ -0.15
MMP28Q9H239 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MMP28Q9H239 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
MMP28Q9H239 AL022326.1-202ENST00000641533 845 ntBASIC14.12□□□□□ -0.15
MMP28Q9H239 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC14.12□□□□□ -0.15
MMP28Q9H239 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
MMP28Q9H239 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
MMP28Q9H239 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
MMP28Q9H239 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MMP28Q9H239 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC14.12□□□□□ -0.15
MMP28Q9H239 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
MMP28Q9H239 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MMP28Q9H239 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
MMP28Q9H239 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC14.12□□□□□ -0.15
MMP28Q9H239 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
MMP28Q9H239 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MMP28Q9H239 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
MMP28Q9H239 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
MMP28Q9H239 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MMP28Q9H239 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MMP28Q9H239 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MMP28Q9H239 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC14.11□□□□□ -0.15
MMP28Q9H239 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC14.11□□□□□ -0.15
MMP28Q9H239 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MMP28Q9H239 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
MMP28Q9H239 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
MMP28Q9H239 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MMP28Q9H239 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
MMP28Q9H239 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MMP28Q9H239 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
MMP28Q9H239 AKR1C7P-201ENST00000305623 895 ntBASIC14.11□□□□□ -0.15
MMP28Q9H239 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
MMP28Q9H239 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MMP28Q9H239 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
MMP28Q9H239 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
MMP28Q9H239 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
MMP28Q9H239 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
MMP28Q9H239 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MMP28Q9H239 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MMP28Q9H239 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC14.11□□□□□ -0.15
MMP28Q9H239 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
MMP28Q9H239 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
MMP28Q9H239 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
MMP28Q9H239 PRYP5-201ENST00000451909 266 ntBASIC14.11□□□□□ -0.15
MMP28Q9H239 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC14.11□□□□□ -0.15
MMP28Q9H239 FGFR3P6-201ENST00000457012 610 ntBASIC14.11□□□□□ -0.15
MMP28Q9H239 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC14.11□□□□□ -0.15
MMP28Q9H239 BX005266.1-201ENST00000473402 457 ntBASIC14.11□□□□□ -0.15
MMP28Q9H239 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
MMP28Q9H239 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC14.11□□□□□ -0.15
MMP28Q9H239 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC14.11□□□□□ -0.15
MMP28Q9H239 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
MMP28Q9H239 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
MMP28Q9H239 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC14.11□□□□□ -0.15
MMP28Q9H239 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
MMP28Q9H239 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MMP28Q9H239 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MMP28Q9H239 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MMP28Q9H239 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MMP28Q9H239 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC14.11□□□□□ -0.15
MMP28Q9H239 SNX33P1-201ENST00000592116 1762 ntBASIC14.11□□□□□ -0.15
MMP28Q9H239 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC14.11□□□□□ -0.15
MMP28Q9H239 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC14.11□□□□□ -0.15
MMP28Q9H239 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MMP28Q9H239 RDX-218ENST00000544551 4117 ntTSL 2 BASIC14.11□□□□□ -0.15
MMP28Q9H239 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
MMP28Q9H239 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
MMP28Q9H239 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC14.11□□□□□ -0.15
MMP28Q9H239 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MMP28Q9H239 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MMP28Q9H239 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
MMP28Q9H239 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MMP28Q9H239 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms