Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
CLIP3Q96DZ5 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CLIP3Q96DZ5 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC15.42■□□□□ 0.06
CLIP3Q96DZ5 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
CLIP3Q96DZ5 BANF1P1-201ENST00000553684 263 ntBASIC15.42■□□□□ 0.06
CLIP3Q96DZ5 AC004233.3-201ENST00000607794 1269 ntBASIC15.42■□□□□ 0.06
CLIP3Q96DZ5 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
CLIP3Q96DZ5 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLIP3Q96DZ5 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLIP3Q96DZ5 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLIP3Q96DZ5 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC15.42■□□□□ 0.06
CLIP3Q96DZ5 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
CLIP3Q96DZ5 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CLIP3Q96DZ5 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLIP3Q96DZ5 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLIP3Q96DZ5 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC15.42■□□□□ 0.06
CLIP3Q96DZ5 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLIP3Q96DZ5 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLIP3Q96DZ5 NORAD-201ENST00000565493 5339 ntBASIC15.42■□□□□ 0.06
CLIP3Q96DZ5 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
CLIP3Q96DZ5 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLIP3Q96DZ5 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC15.42■□□□□ 0.06
CLIP3Q96DZ5 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLIP3Q96DZ5 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC15.42■□□□□ 0.06
CLIP3Q96DZ5 AC087499.5-201ENST00000452760 1342 ntBASIC15.42■□□□□ 0.06
CLIP3Q96DZ5 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 FRMD6-AS1-201ENST00000617151 2229 ntBASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 GGT3P-204ENST00000453783 1664 ntBASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 TDG-209ENST00000544861 1387 ntTSL 2 BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 MRPS18AP1-201ENST00000414458 589 ntBASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 GOLGA6L11P-201ENST00000417252 1298 ntBASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 SERBP1P5-201ENST00000510079 1181 ntBASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 STOM-203ENST00000538954 1257 ntTSL 5 BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 AC061975.2-201ENST00000581722 295 ntBASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 PRR29-209ENST00000582540 967 ntTSL 2 BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 AL133215.2-201ENST00000609242 977 ntBASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLIP3Q96DZ5 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLIP3Q96DZ5 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
CLIP3Q96DZ5 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
CLIP3Q96DZ5 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLIP3Q96DZ5 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
CLIP3Q96DZ5 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC15.4■□□□□ 0.06
CLIP3Q96DZ5 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC15.4■□□□□ 0.06
CLIP3Q96DZ5 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC15.4■□□□□ 0.06
CLIP3Q96DZ5 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLIP3Q96DZ5 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLIP3Q96DZ5 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLIP3Q96DZ5 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
CLIP3Q96DZ5 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CLIP3Q96DZ5 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
CLIP3Q96DZ5 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CLIP3Q96DZ5 EDF1-203ENST00000371649 790 ntTSL 2 BASIC15.4■□□□□ 0.06
CLIP3Q96DZ5 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CLIP3Q96DZ5 CENPM-206ENST00000407253 818 ntTSL 2 BASIC15.4■□□□□ 0.06
CLIP3Q96DZ5 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLIP3Q96DZ5 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CLIP3Q96DZ5 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC15.4■□□□□ 0.06
CLIP3Q96DZ5 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC15.4■□□□□ 0.06
CLIP3Q96DZ5 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms