Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC144BQ3MJ40 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC18.44■□□□□ 0.54
CCDC144BQ3MJ40 AL589702.1-201ENST00000641229 1509 ntBASIC18.44■□□□□ 0.54
CCDC144BQ3MJ40 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 AL391825.1-201ENST00000457671 1364 ntBASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 PRAL-201ENST00000624952 3286 ntBASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 ARSEP1-201ENST00000420443 635 ntBASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 ATP5G2P4-201ENST00000442175 420 ntBASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 DOC2GP-202ENST00000514950 1163 ntBASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 AC024267.1-201ENST00000582320 895 ntBASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 AC112504.1-201ENST00000623415 1841 ntBASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC144BQ3MJ40 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 REXO1L8P-201ENST00000604378 1897 ntBASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 SPDYE18-201ENST00000510091 1050 ntBASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 AC061975.2-201ENST00000581722 295 ntBASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 CHCHD2P3-201ENST00000603038 451 ntBASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 TEX48-202ENST00000612244 662 ntTSL 3 BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 MIR6752-201ENST00000618442 71 ntBASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC18.42■□□□□ 0.54
CCDC144BQ3MJ40 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 OSM-203ENST00000403463 464 ntTSL 3 BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms