Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCNA1P78396 AC006001.1-201ENST00000325130 474 ntBASIC17.91■□□□□ 0.46
CCNA1P78396 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
CCNA1P78396 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCNA1P78396 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCNA1P78396 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCNA1P78396 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
CCNA1P78396 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC17.91■□□□□ 0.46
CCNA1P78396 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC17.91■□□□□ 0.46
CCNA1P78396 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCNA1P78396 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CCNA1P78396 AC006033.1-201ENST00000440505 426 ntBASIC17.91■□□□□ 0.46
CCNA1P78396 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC17.91■□□□□ 0.46
CCNA1P78396 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCNA1P78396 KRT8P13-201ENST00000463294 1010 ntBASIC17.91■□□□□ 0.46
CCNA1P78396 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
CCNA1P78396 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC17.91■□□□□ 0.46
CCNA1P78396 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCNA1P78396 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
CCNA1P78396 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.91■□□□□ 0.46
CCNA1P78396 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
CCNA1P78396 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCNA1P78396 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CCNA1P78396 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CCNA1P78396 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
CCNA1P78396 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCNA1P78396 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCNA1P78396 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC17.9■□□□□ 0.46
CCNA1P78396 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCNA1P78396 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCNA1P78396 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC17.9■□□□□ 0.46
CCNA1P78396 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
CCNA1P78396 AC006449.6-201ENST00000612330 2296 ntBASIC17.9■□□□□ 0.46
CCNA1P78396 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCNA1P78396 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCNA1P78396 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCNA1P78396 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC17.9■□□□□ 0.46
CCNA1P78396 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC17.9■□□□□ 0.46
CCNA1P78396 OLR1-203ENST00000432556 950 ntTSL 2 BASIC17.9■□□□□ 0.46
CCNA1P78396 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC17.9■□□□□ 0.46
CCNA1P78396 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCNA1P78396 FAM86HP-204ENST00000513466 959 ntBASIC17.9■□□□□ 0.46
CCNA1P78396 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC17.9■□□□□ 0.46
CCNA1P78396 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC17.9■□□□□ 0.46
CCNA1P78396 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC17.9■□□□□ 0.46
CCNA1P78396 IGHV3OR16-16-201ENST00000563644 343 ntBASIC17.9■□□□□ 0.46
CCNA1P78396 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC17.9■□□□□ 0.46
CCNA1P78396 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCNA1P78396 AL022328.3-201ENST00000607943 679 ntBASIC17.9■□□□□ 0.46
CCNA1P78396 AC132938.4-201ENST00000623835 848 ntBASIC17.9■□□□□ 0.46
CCNA1P78396 AL139099.5-201ENST00000635274 300 ntBASIC17.9■□□□□ 0.46
CCNA1P78396 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCNA1P78396 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
CCNA1P78396 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC17.9■□□□□ 0.46
CCNA1P78396 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC17.9■□□□□ 0.46
CCNA1P78396 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCNA1P78396 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC17.9■□□□□ 0.46
CCNA1P78396 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCNA1P78396 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCNA1P78396 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCNA1P78396 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCNA1P78396 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.46
CCNA1P78396 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC17.89■□□□□ 0.46
CCNA1P78396 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
CCNA1P78396 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
CCNA1P78396 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.46
CCNA1P78396 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
CCNA1P78396 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
CCNA1P78396 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CCNA1P78396 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
CCNA1P78396 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CCNA1P78396 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCNA1P78396 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCNA1P78396 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCNA1P78396 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCNA1P78396 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CCNA1P78396 Z93015.1-201ENST00000451718 390 ntBASIC17.89■□□□□ 0.45
CCNA1P78396 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CCNA1P78396 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC17.89■□□□□ 0.45
CCNA1P78396 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC17.89■□□□□ 0.45
CCNA1P78396 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC17.89■□□□□ 0.45
CCNA1P78396 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC17.89■□□□□ 0.45
CCNA1P78396 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC17.89■□□□□ 0.45
CCNA1P78396 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC17.89■□□□□ 0.45
CCNA1P78396 AL118558.3-201ENST00000607414 1079 ntBASIC17.89■□□□□ 0.45
CCNA1P78396 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC17.89■□□□□ 0.45
CCNA1P78396 AC138951.2-201ENST00000623455 1161 ntBASIC17.89■□□□□ 0.45
CCNA1P78396 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
CCNA1P78396 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCNA1P78396 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCNA1P78396 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.89■□□□□ 0.45
CCNA1P78396 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC17.89■□□□□ 0.45
CCNA1P78396 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
CCNA1P78396 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCNA1P78396 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCNA1P78396 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.89■□□□□ 0.45
CCNA1P78396 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCNA1P78396 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CCNA1P78396 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.89■□□□□ 0.45
CCNA1P78396 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms