Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC25.95■■□□□ 1.74
CUX1P39880 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC25.95■■□□□ 1.74
CUX1P39880 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
CUX1P39880 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC25.95■■□□□ 1.74
CUX1P39880 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
CUX1P39880 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
CUX1P39880 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC25.95■■□□□ 1.74
CUX1P39880 SP100-205ENST00000409824 1802 ntTSL 5 BASIC25.95■■□□□ 1.74
CUX1P39880 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC25.95■■□□□ 1.74
CUX1P39880 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
CUX1P39880 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC25.95■■□□□ 1.74
CUX1P39880 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
CUX1P39880 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC25.94■■□□□ 1.74
CUX1P39880 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC25.94■■□□□ 1.74
CUX1P39880 RPS15-201ENST00000233609 534 ntTSL 2 BASIC25.94■■□□□ 1.74
CUX1P39880 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC25.94■■□□□ 1.74
CUX1P39880 HLA-K-203ENST00000430151 1046 ntBASIC25.94■■□□□ 1.74
CUX1P39880 AC253536.4-201ENST00000440539 267 ntBASIC25.94■■□□□ 1.74
CUX1P39880 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC25.94■■□□□ 1.74
CUX1P39880 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC25.94■■□□□ 1.74
CUX1P39880 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
CUX1P39880 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC25.94■■□□□ 1.74
CUX1P39880 RPS15-205ENST00000586686 562 ntTSL 5 BASIC25.94■■□□□ 1.74
CUX1P39880 RPS15-208ENST00000591804 711 ntTSL 5 BASIC25.94■■□□□ 1.74
CUX1P39880 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC25.94■■□□□ 1.74
CUX1P39880 CDK7-214ENST00000626796 358 ntTSL 5 BASIC25.94■■□□□ 1.74
CUX1P39880 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC25.94■■□□□ 1.74
CUX1P39880 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
CUX1P39880 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC25.94■■□□□ 1.74
CUX1P39880 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
CUX1P39880 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC25.94■■□□□ 1.74
CUX1P39880 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC25.94■■□□□ 1.74
CUX1P39880 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC25.94■■□□□ 1.74
CUX1P39880 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC25.94■■□□□ 1.74
CUX1P39880 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC25.94■■□□□ 1.74
CUX1P39880 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
CUX1P39880 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC25.94■■□□□ 1.74
CUX1P39880 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC25.94■■□□□ 1.74
CUX1P39880 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC25.94■■□□□ 1.74
CUX1P39880 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
CUX1P39880 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
CUX1P39880 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC25.93■■□□□ 1.74
CUX1P39880 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC25.93■■□□□ 1.74
CUX1P39880 PRKXP1-201ENST00000561423 1122 ntBASIC25.93■■□□□ 1.74
CUX1P39880 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC25.93■■□□□ 1.74
CUX1P39880 MIR3907-201ENST00000579424 151 ntBASIC25.93■■□□□ 1.74
CUX1P39880 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC25.93■■□□□ 1.74
CUX1P39880 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC25.93■■□□□ 1.74
CUX1P39880 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC25.93■■□□□ 1.74
CUX1P39880 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
CUX1P39880 KRT8P4-201ENST00000509735 1454 ntBASIC25.93■■□□□ 1.74
CUX1P39880 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC25.93■■□□□ 1.74
CUX1P39880 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
CUX1P39880 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC25.93■■□□□ 1.74
CUX1P39880 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC25.93■■□□□ 1.74
CUX1P39880 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC25.93■■□□□ 1.74
CUX1P39880 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC25.93■■□□□ 1.74
CUX1P39880 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
CUX1P39880 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
CUX1P39880 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC25.93■■□□□ 1.74
CUX1P39880 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC25.93■■□□□ 1.74
CUX1P39880 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC25.93■■□□□ 1.74
CUX1P39880 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC25.93■■□□□ 1.74
CUX1P39880 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC25.93■■□□□ 1.74
CUX1P39880 DIO1-215ENST00000610607 796 ntTSL 5 BASIC25.93■■□□□ 1.74
CUX1P39880 CU633904.3-201ENST00000624042 1029 ntBASIC25.93■■□□□ 1.74
CUX1P39880 AL645728.2-202ENST00000641679 227 ntBASIC25.93■■□□□ 1.74
CUX1P39880 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC25.93■■□□□ 1.74
CUX1P39880 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
CUX1P39880 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC25.93■■□□□ 1.74
CUX1P39880 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
CUX1P39880 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
CUX1P39880 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC25.92■■□□□ 1.74
CUX1P39880 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC25.92■■□□□ 1.74
CUX1P39880 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC25.92■■□□□ 1.74
CUX1P39880 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC25.92■■□□□ 1.74
CUX1P39880 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC25.92■■□□□ 1.74
CUX1P39880 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
CUX1P39880 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
CUX1P39880 CLUHP2-201ENST00000426660 1303 ntBASIC25.92■■□□□ 1.74
CUX1P39880 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC25.92■■□□□ 1.74
CUX1P39880 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC25.92■■□□□ 1.74
CUX1P39880 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
CUX1P39880 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC25.92■■□□□ 1.74
CUX1P39880 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
CUX1P39880 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC25.92■■□□□ 1.74
CUX1P39880 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC25.92■■□□□ 1.74
CUX1P39880 DPM3-202ENST00000368399 517 ntBASIC25.92■■□□□ 1.74
CUX1P39880 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC25.92■■□□□ 1.74
CUX1P39880 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
CUX1P39880 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC25.91■■□□□ 1.74
CUX1P39880 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
CUX1P39880 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC25.91■■□□□ 1.74
CUX1P39880 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC25.91■■□□□ 1.74
CUX1P39880 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
CUX1P39880 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
CUX1P39880 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
CUX1P39880 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
CUX1P39880 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
CUX1P39880 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms