Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC12.31□□□□□ -0.44
HOXD3P31249 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HOXD3P31249 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HOXD3P31249 ING5-213ENST00000636051 4199 ntTSL 5 BASIC12.31□□□□□ -0.44
HOXD3P31249 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HOXD3P31249 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HOXD3P31249 AP006294.1-201ENST00000415407 339 ntBASIC12.31□□□□□ -0.44
HOXD3P31249 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HOXD3P31249 ELP6-209ENST00000446787 894 ntTSL 3 BASIC12.31□□□□□ -0.44
HOXD3P31249 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC12.31□□□□□ -0.44
HOXD3P31249 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HOXD3P31249 GIMAP3P-201ENST00000495150 836 ntBASIC12.31□□□□□ -0.44
HOXD3P31249 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HOXD3P31249 DOC2GP-202ENST00000514950 1163 ntBASIC12.31□□□□□ -0.44
HOXD3P31249 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
HOXD3P31249 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC12.31□□□□□ -0.44
HOXD3P31249 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC12.31□□□□□ -0.44
HOXD3P31249 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC12.31□□□□□ -0.44
HOXD3P31249 AC044860.1-202ENST00000559481 777 ntBASIC12.31□□□□□ -0.44
HOXD3P31249 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC12.31□□□□□ -0.44
HOXD3P31249 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC12.31□□□□□ -0.44
HOXD3P31249 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
HOXD3P31249 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HOXD3P31249 MIR6069-201ENST00000620069 79 ntBASIC12.31□□□□□ -0.44
HOXD3P31249 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC12.31□□□□□ -0.44
HOXD3P31249 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
HOXD3P31249 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
HOXD3P31249 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HOXD3P31249 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
HOXD3P31249 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
HOXD3P31249 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HOXD3P31249 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HOXD3P31249 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HOXD3P31249 ZBTB45P2-201ENST00000452245 1531 ntBASIC12.31□□□□□ -0.44
HOXD3P31249 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC12.31□□□□□ -0.44
HOXD3P31249 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HOXD3P31249 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC12.31□□□□□ -0.44
HOXD3P31249 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HOXD3P31249 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HOXD3P31249 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HOXD3P31249 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HOXD3P31249 CYP2T1P-202ENST00000641596 2535 ntBASIC12.31□□□□□ -0.44
HOXD3P31249 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HOXD3P31249 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HOXD3P31249 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 AC134407.2-201ENST00000625089 1978 ntBASIC12.3□□□□□ -0.44
HOXD3P31249 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC12.3□□□□□ -0.44
HOXD3P31249 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
HOXD3P31249 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
HOXD3P31249 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC12.3□□□□□ -0.44
HOXD3P31249 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC12.3□□□□□ -0.44
HOXD3P31249 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC12.3□□□□□ -0.44
HOXD3P31249 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
HOXD3P31249 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
HOXD3P31249 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
HOXD3P31249 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 AC098614.1-201ENST00000368528 745 ntBASIC12.3□□□□□ -0.44
HOXD3P31249 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC12.3□□□□□ -0.44
HOXD3P31249 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC12.3□□□□□ -0.44
HOXD3P31249 FXR1-221ENST00000491674 365 ntTSL 2 BASIC12.3□□□□□ -0.44
HOXD3P31249 SPDYE18-201ENST00000510091 1050 ntBASIC12.3□□□□□ -0.44
HOXD3P31249 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC12.3□□□□□ -0.44
HOXD3P31249 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 POLE2-203ENST00000553805 496 ntTSL 2 BASIC12.3□□□□□ -0.44
HOXD3P31249 AL512361.1-201ENST00000554200 418 ntBASIC12.3□□□□□ -0.44
HOXD3P31249 WASH4P-201ENST00000564273 1246 ntBASIC12.3□□□□□ -0.44
HOXD3P31249 AC132938.2-201ENST00000579188 680 ntBASIC12.3□□□□□ -0.44
HOXD3P31249 IFT20-216ENST00000588477 774 ntTSL 5 BASIC12.3□□□□□ -0.44
HOXD3P31249 SPIB-207ENST00000597855 564 ntTSL 4 BASIC12.3□□□□□ -0.44
HOXD3P31249 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 IGHV3-72-202ENST00000621503 303 ntBASIC12.3□□□□□ -0.44
HOXD3P31249 SERF2-217ENST00000630046 862 ntTSL 5 BASIC12.3□□□□□ -0.44
HOXD3P31249 AL033527.5-202ENST00000641632 1098 ntBASIC12.3□□□□□ -0.44
HOXD3P31249 AL591163.1-201ENST00000641757 987 ntBASIC12.3□□□□□ -0.44
HOXD3P31249 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC12.3□□□□□ -0.44
HOXD3P31249 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HOXD3P31249 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC12.3□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms