Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL5A3P25940 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL5A3P25940 UFM1-202ENST00000379649 846 ntTSL 4 BASIC19.5■□□□□ 0.71
COL5A3P25940 MPV17-204ENST00000399052 749 ntTSL 4 BASIC19.5■□□□□ 0.71
COL5A3P25940 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
COL5A3P25940 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL5A3P25940 ATP6V0CP2-201ENST00000469409 207 ntBASIC19.5■□□□□ 0.71
COL5A3P25940 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC19.5■□□□□ 0.71
COL5A3P25940 AC116345.2-201ENST00000512837 523 ntBASIC19.5■□□□□ 0.71
COL5A3P25940 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC19.5■□□□□ 0.71
COL5A3P25940 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL5A3P25940 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
COL5A3P25940 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COL5A3P25940 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL5A3P25940 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COL5A3P25940 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL5A3P25940 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COL5A3P25940 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL5A3P25940 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
COL5A3P25940 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC19.49■□□□□ 0.71
COL5A3P25940 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL5A3P25940 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL5A3P25940 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL5A3P25940 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC19.49■□□□□ 0.71
COL5A3P25940 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL5A3P25940 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC19.49■□□□□ 0.71
COL5A3P25940 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL5A3P25940 PDIA3P2-201ENST00000428073 158 ntBASIC19.49■□□□□ 0.71
COL5A3P25940 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC19.49■□□□□ 0.71
COL5A3P25940 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC19.49■□□□□ 0.71
COL5A3P25940 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC19.49■□□□□ 0.71
COL5A3P25940 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC19.49■□□□□ 0.71
COL5A3P25940 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC19.49■□□□□ 0.71
COL5A3P25940 AC138466.3-201ENST00000619983 221 ntBASIC19.49■□□□□ 0.71
COL5A3P25940 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC19.49■□□□□ 0.71
COL5A3P25940 AC055811.4-201ENST00000624039 1754 ntBASIC19.49■□□□□ 0.71
COL5A3P25940 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC19.49■□□□□ 0.71
COL5A3P25940 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC19.49■□□□□ 0.71
COL5A3P25940 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC19.49■□□□□ 0.71
COL5A3P25940 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL5A3P25940 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL5A3P25940 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL5A3P25940 TUBBP5-203ENST00000508529 1334 ntBASIC19.49■□□□□ 0.71
COL5A3P25940 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL5A3P25940 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL5A3P25940 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC19.49■□□□□ 0.71
COL5A3P25940 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COL5A3P25940 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COL5A3P25940 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
COL5A3P25940 FTLP1-201ENST00000449155 526 ntBASIC19.48■□□□□ 0.71
COL5A3P25940 OARD1-204ENST00000464633 717 ntTSL 2 BASIC19.48■□□□□ 0.71
COL5A3P25940 AC103988.2-201ENST00000561804 725 ntBASIC19.48■□□□□ 0.71
COL5A3P25940 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC19.48■□□□□ 0.71
COL5A3P25940 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL5A3P25940 AL133499.1-201ENST00000596207 608 ntBASIC19.48■□□□□ 0.71
COL5A3P25940 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC19.48■□□□□ 0.71
COL5A3P25940 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC19.48■□□□□ 0.71
COL5A3P25940 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COL5A3P25940 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL5A3P25940 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
COL5A3P25940 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC19.48■□□□□ 0.71
COL5A3P25940 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL5A3P25940 KRT8P4-201ENST00000509735 1454 ntBASIC19.48■□□□□ 0.71
COL5A3P25940 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL5A3P25940 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC19.48■□□□□ 0.71
COL5A3P25940 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COL5A3P25940 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC19.48■□□□□ 0.71
COL5A3P25940 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
COL5A3P25940 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COL5A3P25940 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL5A3P25940 RPS15-201ENST00000233609 534 ntTSL 2 BASIC19.48■□□□□ 0.71
COL5A3P25940 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC19.48■□□□□ 0.71
COL5A3P25940 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL5A3P25940 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL5A3P25940 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL5A3P25940 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COL5A3P25940 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC19.48■□□□□ 0.71
COL5A3P25940 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC19.48■□□□□ 0.71
COL5A3P25940 AC024681.1-201ENST00000521917 487 ntBASIC19.48■□□□□ 0.71
COL5A3P25940 CSH2-206ENST00000560142 749 ntTSL 5 BASIC19.48■□□□□ 0.71
COL5A3P25940 RN7SL774P-201ENST00000577467 290 ntBASIC19.48■□□□□ 0.71
COL5A3P25940 MIR3907-201ENST00000579424 151 ntBASIC19.48■□□□□ 0.71
COL5A3P25940 RPS15-205ENST00000586686 562 ntTSL 5 BASIC19.48■□□□□ 0.71
COL5A3P25940 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COL5A3P25940 RPS15-208ENST00000591804 711 ntTSL 5 BASIC19.48■□□□□ 0.71
COL5A3P25940 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL5A3P25940 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL5A3P25940 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL5A3P25940 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC19.47■□□□□ 0.71
COL5A3P25940 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
COL5A3P25940 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL5A3P25940 AC253536.4-201ENST00000440539 267 ntBASIC19.47■□□□□ 0.71
COL5A3P25940 LDHBP1-201ENST00000455730 1119 ntBASIC19.47■□□□□ 0.71
COL5A3P25940 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC19.47■□□□□ 0.71
COL5A3P25940 AC106794.1-201ENST00000506935 792 ntBASIC19.47■□□□□ 0.71
COL5A3P25940 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC19.47■□□□□ 0.71
COL5A3P25940 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC19.47■□□□□ 0.71
COL5A3P25940 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC19.47■□□□□ 0.71
COL5A3P25940 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC19.47■□□□□ 0.71
COL5A3P25940 AL160314.3-201ENST00000556041 767 ntBASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms