Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AC002472.4-201ENST00000641915 272 ntBASIC12.05□□□□□ -0.48
COL6A5A8TX70 ANKRD30BP2-201ENST00000435744 1610 ntBASIC12.05□□□□□ -0.48
COL6A5A8TX70 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
COL6A5A8TX70 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
COL6A5A8TX70 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
COL6A5A8TX70 ENPP7P8-202ENST00000527856 1345 ntBASIC12.05□□□□□ -0.48
COL6A5A8TX70 MRPL37P1-201ENST00000592451 1337 ntBASIC12.05□□□□□ -0.48
COL6A5A8TX70 CD276-203ENST00000537340 2439 ntTSL 2 BASIC12.05□□□□□ -0.48
COL6A5A8TX70 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
COL6A5A8TX70 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
COL6A5A8TX70 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
COL6A5A8TX70 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
COL6A5A8TX70 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
COL6A5A8TX70 AC098818.2-201ENST00000564925 2320 ntBASIC12.05□□□□□ -0.48
COL6A5A8TX70 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
COL6A5A8TX70 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC12.05□□□□□ -0.48
COL6A5A8TX70 NF2-208ENST00000403435 2568 ntTSL 5 BASIC12.05□□□□□ -0.48
COL6A5A8TX70 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC12.05□□□□□ -0.48
COL6A5A8TX70 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
COL6A5A8TX70 PHACTR1-203ENST00000379335 943 ntTSL 2 BASIC12.05□□□□□ -0.48
COL6A5A8TX70 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC12.05□□□□□ -0.48
COL6A5A8TX70 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC12.05□□□□□ -0.48
COL6A5A8TX70 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC12.05□□□□□ -0.48
COL6A5A8TX70 RPL18AP3-201ENST00000462885 528 ntBASIC12.05□□□□□ -0.48
COL6A5A8TX70 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC12.05□□□□□ -0.48
COL6A5A8TX70 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC12.05□□□□□ -0.48
COL6A5A8TX70 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC12.05□□□□□ -0.48
COL6A5A8TX70 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC12.05□□□□□ -0.48
COL6A5A8TX70 AC025262.2-201ENST00000623975 1056 ntBASIC12.05□□□□□ -0.48
COL6A5A8TX70 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC12.05□□□□□ -0.48
COL6A5A8TX70 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
COL6A5A8TX70 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
COL6A5A8TX70 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
COL6A5A8TX70 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
COL6A5A8TX70 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
COL6A5A8TX70 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
COL6A5A8TX70 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
COL6A5A8TX70 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
COL6A5A8TX70 AC016396.2-201ENST00000562575 1417 ntBASIC12.04□□□□□ -0.48
COL6A5A8TX70 PCGF3-213ENST00000620529 1899 ntBASIC12.04□□□□□ -0.48
COL6A5A8TX70 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
COL6A5A8TX70 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
COL6A5A8TX70 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
COL6A5A8TX70 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
COL6A5A8TX70 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
COL6A5A8TX70 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
COL6A5A8TX70 BCAS2P2-201ENST00000425064 674 ntBASIC12.04□□□□□ -0.48
COL6A5A8TX70 KRT17P4-201ENST00000429445 819 ntBASIC12.04□□□□□ -0.48
COL6A5A8TX70 RN7SL396P-201ENST00000471086 295 ntBASIC12.04□□□□□ -0.48
COL6A5A8TX70 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
COL6A5A8TX70 AC010504.1-201ENST00000591311 585 ntTSL 3 BASIC12.04□□□□□ -0.48
COL6A5A8TX70 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
COL6A5A8TX70 CR392039.1-201ENST00000623217 204 ntBASIC12.04□□□□□ -0.48
COL6A5A8TX70 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC12.04□□□□□ -0.48
COL6A5A8TX70 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
COL6A5A8TX70 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC12.04□□□□□ -0.48
COL6A5A8TX70 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
COL6A5A8TX70 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC12.04□□□□□ -0.48
COL6A5A8TX70 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
COL6A5A8TX70 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
COL6A5A8TX70 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
COL6A5A8TX70 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
COL6A5A8TX70 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
COL6A5A8TX70 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
COL6A5A8TX70 AMT-204ENST00000427987 1646 ntTSL 5 BASIC12.04□□□□□ -0.48
COL6A5A8TX70 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC12.04□□□□□ -0.48
COL6A5A8TX70 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC12.04□□□□□ -0.48
COL6A5A8TX70 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
COL6A5A8TX70 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC12.04□□□□□ -0.48
COL6A5A8TX70 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC12.04□□□□□ -0.48
COL6A5A8TX70 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
COL6A5A8TX70 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC12.04□□□□□ -0.48
COL6A5A8TX70 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC12.04□□□□□ -0.48
COL6A5A8TX70 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
COL6A5A8TX70 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
COL6A5A8TX70 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
COL6A5A8TX70 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
COL6A5A8TX70 HDAC8-204ENST00000373560 819 ntTSL 3 BASIC12.04□□□□□ -0.48
COL6A5A8TX70 SMAD9-IT1-201ENST00000437983 504 ntTSL 3 BASIC12.04□□□□□ -0.48
COL6A5A8TX70 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC12.04□□□□□ -0.48
COL6A5A8TX70 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
COL6A5A8TX70 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC12.04□□□□□ -0.48
COL6A5A8TX70 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC12.04□□□□□ -0.48
COL6A5A8TX70 THY1-209ENST00000580275 578 ntTSL 3 BASIC12.04□□□□□ -0.48
COL6A5A8TX70 ENPP7P14-201ENST00000621765 1040 ntBASIC12.04□□□□□ -0.48
COL6A5A8TX70 AQP7-213ENST00000624075 1270 ntTSL 2 BASIC12.04□□□□□ -0.48
COL6A5A8TX70 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC12.04□□□□□ -0.48
COL6A5A8TX70 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
COL6A5A8TX70 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC12.03□□□□□ -0.48
COL6A5A8TX70 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
COL6A5A8TX70 KRT8P29-201ENST00000420409 1371 ntBASIC12.03□□□□□ -0.48
COL6A5A8TX70 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
COL6A5A8TX70 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
COL6A5A8TX70 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
COL6A5A8TX70 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
COL6A5A8TX70 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
COL6A5A8TX70 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
COL6A5A8TX70 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
COL6A5A8TX70 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC12.03□□□□□ -0.48
COL6A5A8TX70 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms