Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
ZC3H4Q9UPT8 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
ZC3H4Q9UPT8 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
ZC3H4Q9UPT8 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
ZC3H4Q9UPT8 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
ZC3H4Q9UPT8 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
ZC3H4Q9UPT8 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
ZC3H4Q9UPT8 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
ZC3H4Q9UPT8 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
ZC3H4Q9UPT8 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
ZC3H4Q9UPT8 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
ZC3H4Q9UPT8 FOS-202ENST00000535987 1402 ntTSL 2 BASIC19.04■□□□□ 0.64
ZC3H4Q9UPT8 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
ZC3H4Q9UPT8 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
ZC3H4Q9UPT8 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
ZC3H4Q9UPT8 AL121723.1-201ENST00000445194 1519 ntBASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 AC007274.2-201ENST00000421675 662 ntBASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 IQSEC3P1-201ENST00000538799 536 ntBASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 AC007663.3-201ENST00000609632 465 ntBASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 AC006480.2-201ENST00000609770 1337 ntBASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 ZBTB45P2-201ENST00000452245 1531 ntBASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZC3H4Q9UPT8 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
ZC3H4Q9UPT8 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
ZC3H4Q9UPT8 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC19.02■□□□□ 0.64
ZC3H4Q9UPT8 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
ZC3H4Q9UPT8 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
ZC3H4Q9UPT8 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC19.02■□□□□ 0.64
ZC3H4Q9UPT8 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC19.02■□□□□ 0.64
ZC3H4Q9UPT8 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC19.02■□□□□ 0.64
ZC3H4Q9UPT8 RN7SL48P-201ENST00000579283 293 ntBASIC19.02■□□□□ 0.64
ZC3H4Q9UPT8 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC19.02■□□□□ 0.64
ZC3H4Q9UPT8 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC19.02■□□□□ 0.64
ZC3H4Q9UPT8 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
ZC3H4Q9UPT8 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
ZC3H4Q9UPT8 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
ZC3H4Q9UPT8 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
ZC3H4Q9UPT8 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
ZC3H4Q9UPT8 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
ZC3H4Q9UPT8 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
ZC3H4Q9UPT8 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC19.02■□□□□ 0.64
ZC3H4Q9UPT8 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC19.02■□□□□ 0.64
ZC3H4Q9UPT8 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC19.02■□□□□ 0.64
ZC3H4Q9UPT8 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
ZC3H4Q9UPT8 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
ZC3H4Q9UPT8 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC19.02■□□□□ 0.64
ZC3H4Q9UPT8 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms