Protein–RNA interactions for Protein: Q9ULT6

ZNRF3, E3 ubiquitin-protein ligase ZNRF3, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNRF3Q9ULT6 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC18.84■□□□□ 0.61
ZNRF3Q9ULT6 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
ZNRF3Q9ULT6 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
ZNRF3Q9ULT6 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ZNRF3Q9ULT6 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ZNRF3Q9ULT6 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
ZNRF3Q9ULT6 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC18.84■□□□□ 0.61
ZNRF3Q9ULT6 KRT8P19-201ENST00000551916 1455 ntBASIC18.84■□□□□ 0.61
ZNRF3Q9ULT6 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ZNRF3Q9ULT6 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
ZNRF3Q9ULT6 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
ZNRF3Q9ULT6 AC138932.1-201ENST00000534164 6830 ntBASIC18.83■□□□□ 0.61
ZNRF3Q9ULT6 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC18.83■□□□□ 0.61
ZNRF3Q9ULT6 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
ZNRF3Q9ULT6 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC18.83■□□□□ 0.61
ZNRF3Q9ULT6 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
ZNRF3Q9ULT6 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC18.83■□□□□ 0.61
ZNRF3Q9ULT6 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
ZNRF3Q9ULT6 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
ZNRF3Q9ULT6 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
ZNRF3Q9ULT6 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
ZNRF3Q9ULT6 GGCT-203ENST00000409144 836 ntTSL 2 BASIC18.83■□□□□ 0.6
ZNRF3Q9ULT6 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC18.83■□□□□ 0.6
ZNRF3Q9ULT6 KRTAP19-9P-201ENST00000421795 191 ntBASIC18.83■□□□□ 0.6
ZNRF3Q9ULT6 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC18.83■□□□□ 0.6
ZNRF3Q9ULT6 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC18.83■□□□□ 0.6
ZNRF3Q9ULT6 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC18.83■□□□□ 0.6
ZNRF3Q9ULT6 TSACC-208ENST00000481479 741 ntTSL 2 BASIC18.83■□□□□ 0.6
ZNRF3Q9ULT6 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
ZNRF3Q9ULT6 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC18.83■□□□□ 0.6
ZNRF3Q9ULT6 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
ZNRF3Q9ULT6 LRRFIP1P1-201ENST00000498774 2246 ntBASIC18.83■□□□□ 0.6
ZNRF3Q9ULT6 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC18.83■□□□□ 0.6
ZNRF3Q9ULT6 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
ZNRF3Q9ULT6 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
ZNRF3Q9ULT6 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
ZNRF3Q9ULT6 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC18.83■□□□□ 0.6
ZNRF3Q9ULT6 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
ZNRF3Q9ULT6 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
ZNRF3Q9ULT6 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
ZNRF3Q9ULT6 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
ZNRF3Q9ULT6 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
ZNRF3Q9ULT6 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
ZNRF3Q9ULT6 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
ZNRF3Q9ULT6 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 RNU1-114P-201ENST00000365297 166 ntBASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 FXNP2-201ENST00000411625 547 ntBASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 HINT2P1-201ENST00000419438 481 ntBASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
ZNRF3Q9ULT6 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
ZNRF3Q9ULT6 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC18.81■□□□□ 0.6
ZNRF3Q9ULT6 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ZNRF3Q9ULT6 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC18.81■□□□□ 0.6
ZNRF3Q9ULT6 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC18.81■□□□□ 0.6
ZNRF3Q9ULT6 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ZNRF3Q9ULT6 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
ZNRF3Q9ULT6 AL023775.1-201ENST00000454907 1746 ntBASIC18.81■□□□□ 0.6
ZNRF3Q9ULT6 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC18.81■□□□□ 0.6
ZNRF3Q9ULT6 ALOX12P2-203ENST00000570921 1945 ntBASIC18.81■□□□□ 0.6
ZNRF3Q9ULT6 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms