Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC29.86■■■□□ 2.37
SHROOM4Q9ULL8 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
SHROOM4Q9ULL8 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC29.86■■■□□ 2.37
SHROOM4Q9ULL8 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC29.86■■■□□ 2.37
SHROOM4Q9ULL8 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC29.86■■■□□ 2.37
SHROOM4Q9ULL8 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC29.86■■■□□ 2.37
SHROOM4Q9ULL8 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC29.86■■■□□ 2.37
SHROOM4Q9ULL8 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC29.86■■■□□ 2.37
SHROOM4Q9ULL8 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC29.86■■■□□ 2.37
SHROOM4Q9ULL8 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC29.86■■■□□ 2.37
SHROOM4Q9ULL8 AC097359.3-201ENST00000603982 1210 ntBASIC29.86■■■□□ 2.37
SHROOM4Q9ULL8 METTL26-214ENST00000614890 801 ntTSL 3 BASIC29.86■■■□□ 2.37
SHROOM4Q9ULL8 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC29.86■■■□□ 2.37
SHROOM4Q9ULL8 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
SHROOM4Q9ULL8 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC29.86■■■□□ 2.37
SHROOM4Q9ULL8 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC29.86■■■□□ 2.37
SHROOM4Q9ULL8 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC29.85■■■□□ 2.37
SHROOM4Q9ULL8 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC29.85■■■□□ 2.37
SHROOM4Q9ULL8 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC29.85■■■□□ 2.37
SHROOM4Q9ULL8 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
SHROOM4Q9ULL8 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
SHROOM4Q9ULL8 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
SHROOM4Q9ULL8 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
SHROOM4Q9ULL8 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC29.85■■■□□ 2.37
SHROOM4Q9ULL8 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC29.85■■■□□ 2.37
SHROOM4Q9ULL8 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC29.85■■■□□ 2.37
SHROOM4Q9ULL8 AC018695.7-201ENST00000624587 2492 ntBASIC29.85■■■□□ 2.37
SHROOM4Q9ULL8 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
SHROOM4Q9ULL8 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
SHROOM4Q9ULL8 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC29.85■■■□□ 2.37
SHROOM4Q9ULL8 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC29.85■■■□□ 2.37
SHROOM4Q9ULL8 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC29.85■■■□□ 2.37
SHROOM4Q9ULL8 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
SHROOM4Q9ULL8 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC29.85■■■□□ 2.37
SHROOM4Q9ULL8 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC29.85■■■□□ 2.37
SHROOM4Q9ULL8 AC020914.3-201ENST00000594712 304 ntBASIC29.85■■■□□ 2.37
SHROOM4Q9ULL8 SPCS2P2-201ENST00000603270 608 ntBASIC29.85■■■□□ 2.37
SHROOM4Q9ULL8 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC29.85■■■□□ 2.37
SHROOM4Q9ULL8 AC091812.3-201ENST00000621362 345 ntBASIC29.85■■■□□ 2.37
SHROOM4Q9ULL8 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC29.85■■■□□ 2.37
SHROOM4Q9ULL8 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC29.85■■■□□ 2.37
SHROOM4Q9ULL8 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
SHROOM4Q9ULL8 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
SHROOM4Q9ULL8 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
SHROOM4Q9ULL8 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC29.84■■■□□ 2.37
SHROOM4Q9ULL8 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC29.84■■■□□ 2.37
SHROOM4Q9ULL8 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
SHROOM4Q9ULL8 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
SHROOM4Q9ULL8 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC29.84■■■□□ 2.37
SHROOM4Q9ULL8 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
SHROOM4Q9ULL8 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC29.84■■■□□ 2.37
SHROOM4Q9ULL8 C1QBPP1-201ENST00000400117 770 ntBASIC29.84■■■□□ 2.37
SHROOM4Q9ULL8 AC104457.1-201ENST00000401024 814 ntBASIC29.84■■■□□ 2.37
SHROOM4Q9ULL8 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC29.84■■■□□ 2.37
SHROOM4Q9ULL8 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC29.84■■■□□ 2.37
SHROOM4Q9ULL8 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC29.84■■■□□ 2.37
SHROOM4Q9ULL8 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC29.84■■■□□ 2.37
SHROOM4Q9ULL8 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC29.84■■■□□ 2.37
SHROOM4Q9ULL8 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC29.84■■■□□ 2.37
SHROOM4Q9ULL8 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC29.84■■■□□ 2.37
SHROOM4Q9ULL8 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC29.84■■■□□ 2.37
SHROOM4Q9ULL8 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC29.84■■■□□ 2.37
SHROOM4Q9ULL8 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
SHROOM4Q9ULL8 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
SHROOM4Q9ULL8 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC29.83■■■□□ 2.37
SHROOM4Q9ULL8 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC29.83■■■□□ 2.37
SHROOM4Q9ULL8 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC29.83■■■□□ 2.37
SHROOM4Q9ULL8 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC29.83■■■□□ 2.37
SHROOM4Q9ULL8 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
SHROOM4Q9ULL8 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
SHROOM4Q9ULL8 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC29.83■■■□□ 2.37
SHROOM4Q9ULL8 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
SHROOM4Q9ULL8 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC29.83■■■□□ 2.37
SHROOM4Q9ULL8 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
SHROOM4Q9ULL8 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
SHROOM4Q9ULL8 GUK1-206ENST00000366723 845 ntTSL 5 BASIC29.83■■■□□ 2.37
SHROOM4Q9ULL8 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC29.83■■■□□ 2.37
SHROOM4Q9ULL8 MTX1P1-201ENST00000440904 838 ntBASIC29.83■■■□□ 2.37
SHROOM4Q9ULL8 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC29.83■■■□□ 2.37
SHROOM4Q9ULL8 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC29.83■■■□□ 2.37
SHROOM4Q9ULL8 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC29.83■■■□□ 2.37
SHROOM4Q9ULL8 HIST2H2BC-201ENST00000498492 580 ntBASIC29.83■■■□□ 2.37
SHROOM4Q9ULL8 AC025279.2-201ENST00000569730 653 ntBASIC29.83■■■□□ 2.37
SHROOM4Q9ULL8 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC29.83■■■□□ 2.37
SHROOM4Q9ULL8 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
SHROOM4Q9ULL8 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC29.83■■■□□ 2.37
SHROOM4Q9ULL8 BCL2-203ENST00000589955 5011 ntBASIC29.83■■■□□ 2.37
SHROOM4Q9ULL8 AGER-206ENST00000375070 1463 ntTSL 5 BASIC29.83■■■□□ 2.37
SHROOM4Q9ULL8 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
SHROOM4Q9ULL8 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC29.83■■■□□ 2.37
SHROOM4Q9ULL8 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
SHROOM4Q9ULL8 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
SHROOM4Q9ULL8 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC29.83■■■□□ 2.37
SHROOM4Q9ULL8 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC29.83■■■□□ 2.37
SHROOM4Q9ULL8 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC29.83■■■□□ 2.37
SHROOM4Q9ULL8 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
SHROOM4Q9ULL8 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC29.82■■■□□ 2.36
SHROOM4Q9ULL8 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
SHROOM4Q9ULL8 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
SHROOM4Q9ULL8 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms