Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 CETN4P-206ENST00000642099 2168 ntBASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 LINC00554-201ENST00000564841 3011 ntBASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 AC007950.2-201ENST00000615045 2347 ntBASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 FO538757.1-201ENST00000623083 1397 ntBASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 RPL37AP1-201ENST00000412502 279 ntBASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 AL080243.2-201ENST00000418783 582 ntBASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 AC069120.2-201ENST00000524091 540 ntBASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 AL138828.2-201ENST00000615812 383 ntBASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 AC008761.3-201ENST00000624803 892 ntBASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 AC132872.4-202ENST00000622924 2756 ntBASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 AC011477.6-201ENST00000604980 1927 ntBASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 KRT8P37-201ENST00000451609 1420 ntBASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 REXO1L1P-202ENST00000608646 1974 ntBASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC15.42■□□□□ 0.06
CUEDC1Q9NWM3 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 MIR943-201ENST00000401286 94 ntBASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 SPDYE17-201ENST00000412399 783 ntBASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 AC092580.3-201ENST00000430932 139 ntBASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 GPER1-207ENST00000619052 571 ntTSL 2 BASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 Z99916.3-201ENST00000623422 1080 ntBASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 AC073592.8-201ENST00000624126 511 ntBASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 GRAMD4P3-201ENST00000621665 1669 ntBASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC15.41■□□□□ 0.06
CUEDC1Q9NWM3 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms