Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
CCDC28BQ9BUN5 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC15.52■□□□□ 0.07
CCDC28BQ9BUN5 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 LINC00552-201ENST00000625151 2579 ntBASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 CELP-203ENST00000624767 2414 ntTSL 5 BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 AC092474.2-201ENST00000424288 719 ntBASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 THTPA-204ENST00000554970 569 ntTSL 4 BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 THTPA-206ENST00000556015 535 ntTSL 3 BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 RPL28-209ENST00000560055 670 ntTSL 3 BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 LINC01711-201ENST00000598340 967 ntBASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 REXO1L2P-201ENST00000425429 2069 ntBASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 AP002414.3-201ENST00000589352 1468 ntBASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 OS9-207ENST00000439210 1946 ntTSL 2 BASIC15.51■□□□□ 0.07
CCDC28BQ9BUN5 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC28BQ9BUN5 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC28BQ9BUN5 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC28BQ9BUN5 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC28BQ9BUN5 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC15.5■□□□□ 0.07
CCDC28BQ9BUN5 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
CCDC28BQ9BUN5 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC15.5■□□□□ 0.07
CCDC28BQ9BUN5 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC28BQ9BUN5 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC28BQ9BUN5 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC15.5■□□□□ 0.07
CCDC28BQ9BUN5 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC28BQ9BUN5 MROH4P-201ENST00000431302 1578 ntBASIC15.5■□□□□ 0.07
CCDC28BQ9BUN5 PMS2P7-201ENST00000506558 1336 ntBASIC15.5■□□□□ 0.07
CCDC28BQ9BUN5 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
CCDC28BQ9BUN5 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC28BQ9BUN5 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC28BQ9BUN5 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC15.5■□□□□ 0.07
CCDC28BQ9BUN5 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC28BQ9BUN5 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC28BQ9BUN5 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC15.5■□□□□ 0.07
CCDC28BQ9BUN5 RNPS1P1-201ENST00000507437 918 ntBASIC15.5■□□□□ 0.07
CCDC28BQ9BUN5 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC15.5■□□□□ 0.07
CCDC28BQ9BUN5 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
CCDC28BQ9BUN5 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC15.5■□□□□ 0.07
CCDC28BQ9BUN5 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC15.5■□□□□ 0.07
CCDC28BQ9BUN5 MIR4313-201ENST00000580760 101 ntBASIC15.5■□□□□ 0.07
CCDC28BQ9BUN5 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC28BQ9BUN5 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC15.5■□□□□ 0.07
CCDC28BQ9BUN5 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC28BQ9BUN5 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC15.5■□□□□ 0.07
CCDC28BQ9BUN5 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC28BQ9BUN5 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
CCDC28BQ9BUN5 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
CCDC28BQ9BUN5 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC28BQ9BUN5 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
CCDC28BQ9BUN5 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC28BQ9BUN5 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms