Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 ING5-213ENST00000636051 4199 ntTSL 5 BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 GRN-214ENST00000589265 1632 ntTSL 5 BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 AC020658.6-201ENST00000623564 1870 ntBASIC12.29□□□□□ -0.44
CCDC140Q96MF4 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 NME4-207ENST00000450036 985 ntTSL 3 BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 SERBP1P3-201ENST00000459980 809 ntBASIC12.29□□□□□ -0.44
CCDC140Q96MF4 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 AL607033.1-201ENST00000623900 1599 ntBASIC12.29□□□□□ -0.44
CCDC140Q96MF4 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC12.29□□□□□ -0.44
CCDC140Q96MF4 AC009090.5-201ENST00000624886 2285 ntBASIC12.28□□□□□ -0.44
CCDC140Q96MF4 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 AC105250.1-201ENST00000509378 2057 ntBASIC12.28□□□□□ -0.44
CCDC140Q96MF4 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 PON3-203ENST00000427422 894 ntTSL 3 BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC12.28□□□□□ -0.44
CCDC140Q96MF4 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC12.28□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms