Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 AC064836.3-201ENST00000607928 673 ntBASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 U82695.1-201ENST00000635752 1889 ntBASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC14.92□□□□□ -0.02
DEPDC4Q8N2C3 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 PTCHD3P3-201ENST00000403073 906 ntBASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 MIR1233-2-201ENST00000408138 82 ntBASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 MIR1233-1-201ENST00000408722 82 ntBASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 AC108073.2-201ENST00000464002 357 ntBASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC14.91□□□□□ -0.02
DEPDC4Q8N2C3 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 SLC22A20-204ENST00000530038 1673 ntBASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 AC008677.1-201ENST00000519230 1561 ntBASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 VN2R19P-201ENST00000442399 1052 ntBASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC14.9□□□□□ -0.02
DEPDC4Q8N2C3 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 442.6 ms