Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NPHP3Q7Z494 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NPHP3Q7Z494 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NPHP3Q7Z494 AC148477.4-201ENST00000613430 1793 ntBASIC21.22■□□□□ 0.99
NPHP3Q7Z494 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC21.22■□□□□ 0.99
NPHP3Q7Z494 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
NPHP3Q7Z494 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC21.22■□□□□ 0.99
NPHP3Q7Z494 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NPHP3Q7Z494 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
NPHP3Q7Z494 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NPHP3Q7Z494 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC21.22■□□□□ 0.99
NPHP3Q7Z494 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC21.22■□□□□ 0.99
NPHP3Q7Z494 PRKXP1-201ENST00000561423 1122 ntBASIC21.22■□□□□ 0.99
NPHP3Q7Z494 RN7SL774P-201ENST00000577467 290 ntBASIC21.22■□□□□ 0.99
NPHP3Q7Z494 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC21.22■□□□□ 0.99
NPHP3Q7Z494 UBL5-208ENST00000593087 320 ntTSL 3 BASIC21.22■□□□□ 0.99
NPHP3Q7Z494 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC21.22■□□□□ 0.99
NPHP3Q7Z494 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC21.22■□□□□ 0.99
NPHP3Q7Z494 ENPP7P14-201ENST00000621765 1040 ntBASIC21.22■□□□□ 0.99
NPHP3Q7Z494 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC21.22■□□□□ 0.99
NPHP3Q7Z494 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NPHP3Q7Z494 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
NPHP3Q7Z494 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NPHP3Q7Z494 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP3Q7Z494 UBALD1-205ENST00000590891 2641 ntBASIC21.21■□□□□ 0.99
NPHP3Q7Z494 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP3Q7Z494 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP3Q7Z494 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
NPHP3Q7Z494 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP3Q7Z494 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP3Q7Z494 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC21.21■□□□□ 0.99
NPHP3Q7Z494 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC21.21■□□□□ 0.99
NPHP3Q7Z494 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
NPHP3Q7Z494 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP3Q7Z494 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP3Q7Z494 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP3Q7Z494 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP3Q7Z494 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP3Q7Z494 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP3Q7Z494 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP3Q7Z494 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP3Q7Z494 B9D1-203ENST00000395615 805 ntTSL 3 BASIC21.21■□□□□ 0.99
NPHP3Q7Z494 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC21.21■□□□□ 0.99
NPHP3Q7Z494 AC008267.1-201ENST00000474858 1069 ntBASIC21.21■□□□□ 0.99
NPHP3Q7Z494 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC21.21■□□□□ 0.99
NPHP3Q7Z494 AC022217.1-201ENST00000521069 738 ntBASIC21.21■□□□□ 0.99
NPHP3Q7Z494 NCK2-206ENST00000522586 490 ntTSL 5 BASIC21.21■□□□□ 0.99
NPHP3Q7Z494 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
NPHP3Q7Z494 AL645939.5-201ENST00000606834 243 ntBASIC21.21■□□□□ 0.99
NPHP3Q7Z494 AC091544.8-201ENST00000619490 361 ntBASIC21.21■□□□□ 0.99
NPHP3Q7Z494 GPR39-203ENST00000622084 900 ntTSL 5 BASIC21.21■□□□□ 0.99
NPHP3Q7Z494 AL353726.2-201ENST00000623259 884 ntBASIC21.21■□□□□ 0.99
NPHP3Q7Z494 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
NPHP3Q7Z494 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP3Q7Z494 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP3Q7Z494 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP3Q7Z494 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC21.21■□□□□ 0.99
NPHP3Q7Z494 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.99
NPHP3Q7Z494 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC21.2■□□□□ 0.99
NPHP3Q7Z494 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC21.2■□□□□ 0.99
NPHP3Q7Z494 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.99
NPHP3Q7Z494 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NPHP3Q7Z494 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NPHP3Q7Z494 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC21.2■□□□□ 0.98
NPHP3Q7Z494 AL645608.8-201ENST00000606034 2086 ntBASIC21.2■□□□□ 0.98
NPHP3Q7Z494 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
NPHP3Q7Z494 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC21.2■□□□□ 0.98
NPHP3Q7Z494 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
NPHP3Q7Z494 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC21.2■□□□□ 0.98
NPHP3Q7Z494 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NPHP3Q7Z494 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC21.2■□□□□ 0.98
NPHP3Q7Z494 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NPHP3Q7Z494 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NPHP3Q7Z494 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC21.2■□□□□ 0.98
NPHP3Q7Z494 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NPHP3Q7Z494 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC21.2■□□□□ 0.98
NPHP3Q7Z494 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC21.2■□□□□ 0.98
NPHP3Q7Z494 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NPHP3Q7Z494 Z97180.1-201ENST00000445173 988 ntBASIC21.2■□□□□ 0.98
NPHP3Q7Z494 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC21.2■□□□□ 0.98
NPHP3Q7Z494 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC21.2■□□□□ 0.98
NPHP3Q7Z494 PPY2P-201ENST00000582808 702 ntBASIC21.2■□□□□ 0.98
NPHP3Q7Z494 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NPHP3Q7Z494 RNF216P1-203ENST00000404404 2427 ntBASIC21.2■□□□□ 0.98
NPHP3Q7Z494 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
NPHP3Q7Z494 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC21.2■□□□□ 0.98
NPHP3Q7Z494 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC21.2■□□□□ 0.98
NPHP3Q7Z494 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
NPHP3Q7Z494 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC21.2■□□□□ 0.98
NPHP3Q7Z494 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
NPHP3Q7Z494 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
NPHP3Q7Z494 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC21.19■□□□□ 0.98
NPHP3Q7Z494 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC21.19■□□□□ 0.98
NPHP3Q7Z494 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP3Q7Z494 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP3Q7Z494 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
NPHP3Q7Z494 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC21.19■□□□□ 0.98
NPHP3Q7Z494 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC21.19■□□□□ 0.98
NPHP3Q7Z494 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC21.19■□□□□ 0.98
NPHP3Q7Z494 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms