Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
VPS53Q5VIR6 AC055876.3-201ENST00000431496 288 ntBASIC19.19■□□□□ 0.66
VPS53Q5VIR6 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VPS53Q5VIR6 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
VPS53Q5VIR6 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS53Q5VIR6 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VPS53Q5VIR6 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC19.19■□□□□ 0.66
VPS53Q5VIR6 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS53Q5VIR6 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC19.19■□□□□ 0.66
VPS53Q5VIR6 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC19.19■□□□□ 0.66
VPS53Q5VIR6 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC19.19■□□□□ 0.66
VPS53Q5VIR6 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC19.19■□□□□ 0.66
VPS53Q5VIR6 AC138649.4-201ENST00000612222 287 ntBASIC19.19■□□□□ 0.66
VPS53Q5VIR6 AC073592.8-201ENST00000624126 511 ntBASIC19.19■□□□□ 0.66
VPS53Q5VIR6 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VPS53Q5VIR6 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC19.19■□□□□ 0.66
VPS53Q5VIR6 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS53Q5VIR6 WARS-232ENST00000556645 2508 ntTSL 5 BASIC19.19■□□□□ 0.66
VPS53Q5VIR6 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC19.19■□□□□ 0.66
VPS53Q5VIR6 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC19.19■□□□□ 0.66
VPS53Q5VIR6 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VPS53Q5VIR6 CETN4P-206ENST00000642099 2168 ntBASIC19.19■□□□□ 0.66
VPS53Q5VIR6 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
VPS53Q5VIR6 AC092384.3-202ENST00000564646 2873 ntBASIC19.18■□□□□ 0.66
VPS53Q5VIR6 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS53Q5VIR6 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VPS53Q5VIR6 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS53Q5VIR6 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
VPS53Q5VIR6 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS53Q5VIR6 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC19.18■□□□□ 0.66
VPS53Q5VIR6 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS53Q5VIR6 RPS19-201ENST00000221975 500 ntTSL 3 BASIC19.18■□□□□ 0.66
VPS53Q5VIR6 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS53Q5VIR6 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VPS53Q5VIR6 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC19.18■□□□□ 0.66
VPS53Q5VIR6 HLA-V-204ENST00000476601 1289 ntBASIC19.18■□□□□ 0.66
VPS53Q5VIR6 AC027369.6-201ENST00000525520 931 ntBASIC19.18■□□□□ 0.66
VPS53Q5VIR6 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS53Q5VIR6 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
VPS53Q5VIR6 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
VPS53Q5VIR6 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VPS53Q5VIR6 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VPS53Q5VIR6 AL158211.3-201ENST00000607385 239 ntBASIC19.18■□□□□ 0.66
VPS53Q5VIR6 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS53Q5VIR6 REXO1L1P-202ENST00000608646 1974 ntBASIC19.18■□□□□ 0.66
VPS53Q5VIR6 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS53Q5VIR6 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS53Q5VIR6 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS53Q5VIR6 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC19.18■□□□□ 0.66
VPS53Q5VIR6 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
VPS53Q5VIR6 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS53Q5VIR6 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VPS53Q5VIR6 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS53Q5VIR6 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS53Q5VIR6 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS53Q5VIR6 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS53Q5VIR6 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
VPS53Q5VIR6 PRAL-201ENST00000624952 3286 ntBASIC19.17■□□□□ 0.66
VPS53Q5VIR6 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS53Q5VIR6 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
VPS53Q5VIR6 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
VPS53Q5VIR6 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC19.17■□□□□ 0.66
VPS53Q5VIR6 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS53Q5VIR6 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VPS53Q5VIR6 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS53Q5VIR6 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS53Q5VIR6 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS53Q5VIR6 AZGP1P1-201ENST00000411909 902 ntBASIC19.17■□□□□ 0.66
VPS53Q5VIR6 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC19.17■□□□□ 0.66
VPS53Q5VIR6 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC19.17■□□□□ 0.66
VPS53Q5VIR6 EEF1DP4-201ENST00000446006 880 ntBASIC19.17■□□□□ 0.66
VPS53Q5VIR6 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC19.17■□□□□ 0.66
VPS53Q5VIR6 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC19.17■□□□□ 0.66
VPS53Q5VIR6 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC19.17■□□□□ 0.66
VPS53Q5VIR6 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC19.17■□□□□ 0.66
VPS53Q5VIR6 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC19.17■□□□□ 0.66
VPS53Q5VIR6 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC19.17■□□□□ 0.66
VPS53Q5VIR6 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS53Q5VIR6 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VPS53Q5VIR6 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS53Q5VIR6 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS53Q5VIR6 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC19.17■□□□□ 0.66
VPS53Q5VIR6 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS53Q5VIR6 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS53Q5VIR6 KRT8P12-202ENST00000472924 1397 ntBASIC19.17■□□□□ 0.66
VPS53Q5VIR6 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS53Q5VIR6 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VPS53Q5VIR6 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS53Q5VIR6 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS53Q5VIR6 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VPS53Q5VIR6 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS53Q5VIR6 KRT8P37-201ENST00000451609 1420 ntBASIC19.17■□□□□ 0.66
VPS53Q5VIR6 AC100757.3-201ENST00000622361 1406 ntBASIC19.17■□□□□ 0.66
VPS53Q5VIR6 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS53Q5VIR6 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC19.16■□□□□ 0.66
VPS53Q5VIR6 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms