Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 IGHV3-65-201ENST00000523210 341 ntBASIC14.31□□□□□ -0.12
CCDC58Q4VC31 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 IRF8-202ENST00000562492 946 ntTSL 3 BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 U1.21-201ENST00000580816 167 ntBASIC14.31□□□□□ -0.12
CCDC58Q4VC31 CYGB-205ENST00000590175 830 ntTSL 3 BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC58Q4VC31 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC58Q4VC31 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
CCDC58Q4VC31 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC58Q4VC31 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
CCDC58Q4VC31 AL139385.1-201ENST00000611744 3272 ntBASIC14.3□□□□□ -0.12
CCDC58Q4VC31 RELA-227ENST00000615805 2236 ntTSL 5 BASIC14.3□□□□□ -0.12
CCDC58Q4VC31 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC58Q4VC31 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC14.3□□□□□ -0.12
CCDC58Q4VC31 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC58Q4VC31 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC14.3□□□□□ -0.12
CCDC58Q4VC31 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC58Q4VC31 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC14.3□□□□□ -0.12
CCDC58Q4VC31 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC58Q4VC31 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC58Q4VC31 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC58Q4VC31 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC14.3□□□□□ -0.12
CCDC58Q4VC31 DUSP5P1-201ENST00000441325 1139 ntBASIC14.3□□□□□ -0.12
CCDC58Q4VC31 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
CCDC58Q4VC31 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC14.3□□□□□ -0.12
CCDC58Q4VC31 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC14.3□□□□□ -0.12
CCDC58Q4VC31 CIPC-205ENST00000555437 566 ntTSL 3 BASIC14.3□□□□□ -0.12
CCDC58Q4VC31 AC021087.4-201ENST00000563761 564 ntBASIC14.3□□□□□ -0.12
CCDC58Q4VC31 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC58Q4VC31 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC58Q4VC31 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC58Q4VC31 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
CCDC58Q4VC31 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC58Q4VC31 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC58Q4VC31 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC14.3□□□□□ -0.12
CCDC58Q4VC31 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC58Q4VC31 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC58Q4VC31 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC58Q4VC31 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC58Q4VC31 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
CCDC58Q4VC31 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC58Q4VC31 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC58Q4VC31 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC14.29□□□□□ -0.12
CCDC58Q4VC31 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC58Q4VC31 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
CCDC58Q4VC31 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
CCDC58Q4VC31 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
CCDC58Q4VC31 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC14.29□□□□□ -0.12
CCDC58Q4VC31 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC58Q4VC31 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC58Q4VC31 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC14.29□□□□□ -0.12
CCDC58Q4VC31 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC58Q4VC31 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC58Q4VC31 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC58Q4VC31 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC58Q4VC31 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC58Q4VC31 AC093724.1-201ENST00000448659 1027 ntBASIC14.29□□□□□ -0.12
CCDC58Q4VC31 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC58Q4VC31 KRT18P31-201ENST00000506277 1292 ntBASIC14.29□□□□□ -0.12
CCDC58Q4VC31 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC14.29□□□□□ -0.12
CCDC58Q4VC31 PNMT-203ENST00000581428 677 ntTSL 2 BASIC14.29□□□□□ -0.12
CCDC58Q4VC31 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC14.29□□□□□ -0.12
CCDC58Q4VC31 AL031055.1-201ENST00000606362 631 ntBASIC14.29□□□□□ -0.12
CCDC58Q4VC31 REXO1L6P-202ENST00000619970 1078 ntBASIC14.29□□□□□ -0.12
CCDC58Q4VC31 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC14.29□□□□□ -0.12
CCDC58Q4VC31 HADH-212ENST00000638621 741 ntTSL 5 BASIC14.29□□□□□ -0.12
CCDC58Q4VC31 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC58Q4VC31 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC14.29□□□□□ -0.12
CCDC58Q4VC31 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms