Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
CHD9Q3L8U1 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CHD9Q3L8U1 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHD9Q3L8U1 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.44■□□□□ 0.22
CHD9Q3L8U1 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CHD9Q3L8U1 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC16.44■□□□□ 0.22
CHD9Q3L8U1 RN7SL818P-201ENST00000485099 259 ntBASIC16.44■□□□□ 0.22
CHD9Q3L8U1 AC141586.1-203ENST00000567242 366 ntBASIC16.44■□□□□ 0.22
CHD9Q3L8U1 RN7SL725P-201ENST00000606439 259 ntBASIC16.44■□□□□ 0.22
CHD9Q3L8U1 MEG3_2.1-201ENST00000611456 105 ntBASIC16.44■□□□□ 0.22
CHD9Q3L8U1 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.44■□□□□ 0.22
CHD9Q3L8U1 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CHD9Q3L8U1 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHD9Q3L8U1 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHD9Q3L8U1 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHD9Q3L8U1 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
CHD9Q3L8U1 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHD9Q3L8U1 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CHD9Q3L8U1 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CHD9Q3L8U1 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CHD9Q3L8U1 MIR4683-201ENST00000579659 81 ntBASIC16.44■□□□□ 0.22
CHD9Q3L8U1 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC16.44■□□□□ 0.22
CHD9Q3L8U1 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHD9Q3L8U1 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHD9Q3L8U1 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHD9Q3L8U1 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHD9Q3L8U1 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHD9Q3L8U1 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHD9Q3L8U1 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC16.44■□□□□ 0.22
CHD9Q3L8U1 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC16.44■□□□□ 0.22
CHD9Q3L8U1 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC16.44■□□□□ 0.22
CHD9Q3L8U1 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CHD9Q3L8U1 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
CHD9Q3L8U1 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CHD9Q3L8U1 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CHD9Q3L8U1 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CHD9Q3L8U1 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CHD9Q3L8U1 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC16.43■□□□□ 0.22
CHD9Q3L8U1 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CHD9Q3L8U1 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CHD9Q3L8U1 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CHD9Q3L8U1 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC16.43■□□□□ 0.22
CHD9Q3L8U1 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CHD9Q3L8U1 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CHD9Q3L8U1 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
CHD9Q3L8U1 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC16.43■□□□□ 0.22
CHD9Q3L8U1 SLC16A6P1-201ENST00000413214 1059 ntBASIC16.43■□□□□ 0.22
CHD9Q3L8U1 AC098935.1-201ENST00000446057 611 ntBASIC16.43■□□□□ 0.22
CHD9Q3L8U1 MARK2P5-201ENST00000507649 634 ntBASIC16.43■□□□□ 0.22
CHD9Q3L8U1 SYT17-208ENST00000568433 812 ntTSL 3 BASIC16.43■□□□□ 0.22
CHD9Q3L8U1 PCBP2-OT1-201ENST00000634357 590 ntBASIC16.43■□□□□ 0.22
CHD9Q3L8U1 AC004923.1-202ENST00000642106 209 ntBASIC16.43■□□□□ 0.22
CHD9Q3L8U1 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
CHD9Q3L8U1 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CHD9Q3L8U1 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CHD9Q3L8U1 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CHD9Q3L8U1 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC16.43■□□□□ 0.22
CHD9Q3L8U1 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CHD9Q3L8U1 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CHD9Q3L8U1 CHMP1AP1-201ENST00000445563 662 ntBASIC16.43■□□□□ 0.22
CHD9Q3L8U1 AL391280.1-201ENST00000506969 1062 ntBASIC16.43■□□□□ 0.22
CHD9Q3L8U1 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC16.43■□□□□ 0.22
CHD9Q3L8U1 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC16.43■□□□□ 0.22
CHD9Q3L8U1 ZACNP1-201ENST00000612259 710 ntBASIC16.43■□□□□ 0.22
CHD9Q3L8U1 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
CHD9Q3L8U1 KRT8P4-201ENST00000509735 1454 ntBASIC16.43■□□□□ 0.22
CHD9Q3L8U1 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC16.43■□□□□ 0.22
CHD9Q3L8U1 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.43■□□□□ 0.22
CHD9Q3L8U1 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
CHD9Q3L8U1 ME2P1-201ENST00000426028 1970 ntBASIC16.42■□□□□ 0.22
CHD9Q3L8U1 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC16.42■□□□□ 0.22
CHD9Q3L8U1 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.42■□□□□ 0.22
CHD9Q3L8U1 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CHD9Q3L8U1 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC16.42■□□□□ 0.22
CHD9Q3L8U1 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
CHD9Q3L8U1 PGR-209ENST00000617858 2816 ntTSL 5 BASIC16.42■□□□□ 0.22
CHD9Q3L8U1 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
CHD9Q3L8U1 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CHD9Q3L8U1 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC16.42■□□□□ 0.22
CHD9Q3L8U1 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC16.42■□□□□ 0.22
CHD9Q3L8U1 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CHD9Q3L8U1 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC16.42■□□□□ 0.22
CHD9Q3L8U1 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC16.42■□□□□ 0.22
CHD9Q3L8U1 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC16.42■□□□□ 0.22
CHD9Q3L8U1 NEU3-205ENST00000531619 582 ntTSL 5 BASIC16.42■□□□□ 0.22
CHD9Q3L8U1 AC138894.2-201ENST00000602838 371 ntBASIC16.42■□□□□ 0.22
CHD9Q3L8U1 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CHD9Q3L8U1 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CHD9Q3L8U1 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.42■□□□□ 0.22
CHD9Q3L8U1 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CHD9Q3L8U1 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CHD9Q3L8U1 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
CHD9Q3L8U1 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
CHD9Q3L8U1 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CHD9Q3L8U1 AC104073.2-201ENST00000453737 312 ntBASIC16.42■□□□□ 0.22
CHD9Q3L8U1 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC16.42■□□□□ 0.22
CHD9Q3L8U1 TBCB-211ENST00000589996 724 ntTSL 3 BASIC16.42■□□□□ 0.22
CHD9Q3L8U1 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC16.42■□□□□ 0.22
CHD9Q3L8U1 AC068587.8-201ENST00000641239 219 ntBASIC16.42■□□□□ 0.22
CHD9Q3L8U1 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms