Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
EPHB3P54753 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC16.52■□□□□ 0.24
EPHB3P54753 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
EPHB3P54753 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
EPHB3P54753 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
EPHB3P54753 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
EPHB3P54753 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
EPHB3P54753 AL121723.1-201ENST00000445194 1519 ntBASIC16.52■□□□□ 0.24
EPHB3P54753 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.52■□□□□ 0.24
EPHB3P54753 LRRFIP1P1-201ENST00000498774 2246 ntBASIC16.52■□□□□ 0.24
EPHB3P54753 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
EPHB3P54753 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC16.52■□□□□ 0.24
EPHB3P54753 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
EPHB3P54753 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
EPHB3P54753 MGST3-203ENST00000367885 680 ntTSL 2 BASIC16.52■□□□□ 0.24
EPHB3P54753 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC16.52■□□□□ 0.24
EPHB3P54753 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC16.52■□□□□ 0.24
EPHB3P54753 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC16.52■□□□□ 0.24
EPHB3P54753 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
EPHB3P54753 VDAC1P7-201ENST00000462417 847 ntBASIC16.52■□□□□ 0.24
EPHB3P54753 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
EPHB3P54753 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC16.52■□□□□ 0.24
EPHB3P54753 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
EPHB3P54753 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC16.52■□□□□ 0.24
EPHB3P54753 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC16.52■□□□□ 0.24
EPHB3P54753 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC16.52■□□□□ 0.24
EPHB3P54753 PTP4A1P2-201ENST00000546033 454 ntBASIC16.52■□□□□ 0.24
EPHB3P54753 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
EPHB3P54753 APRT-204ENST00000563655 709 ntTSL 5 BASIC16.52■□□□□ 0.24
EPHB3P54753 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC16.52■□□□□ 0.24
EPHB3P54753 AC124283.3-201ENST00000570869 594 ntBASIC16.52■□□□□ 0.24
EPHB3P54753 MIR5189-201ENST00000577370 114 ntBASIC16.52■□□□□ 0.24
EPHB3P54753 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC16.52■□□□□ 0.24
EPHB3P54753 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC16.52■□□□□ 0.24
EPHB3P54753 AC133552.6-201ENST00000613406 534 ntBASIC16.52■□□□□ 0.24
EPHB3P54753 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC16.52■□□□□ 0.24
EPHB3P54753 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC16.52■□□□□ 0.24
EPHB3P54753 RPSAP52-203ENST00000622976 1023 ntBASIC16.52■□□□□ 0.24
EPHB3P54753 SERF2-217ENST00000630046 862 ntTSL 5 BASIC16.52■□□□□ 0.24
EPHB3P54753 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC16.52■□□□□ 0.24
EPHB3P54753 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
EPHB3P54753 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
EPHB3P54753 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
EPHB3P54753 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
EPHB3P54753 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
EPHB3P54753 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
EPHB3P54753 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
EPHB3P54753 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC16.52■□□□□ 0.23
EPHB3P54753 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
EPHB3P54753 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.52■□□□□ 0.23
EPHB3P54753 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
EPHB3P54753 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
EPHB3P54753 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
EPHB3P54753 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
EPHB3P54753 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
EPHB3P54753 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
EPHB3P54753 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
EPHB3P54753 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.52■□□□□ 0.23
EPHB3P54753 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
EPHB3P54753 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC16.51■□□□□ 0.23
EPHB3P54753 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.51■□□□□ 0.23
EPHB3P54753 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC16.51■□□□□ 0.23
EPHB3P54753 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
EPHB3P54753 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
EPHB3P54753 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC16.51■□□□□ 0.23
EPHB3P54753 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
EPHB3P54753 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.51■□□□□ 0.23
EPHB3P54753 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
EPHB3P54753 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
EPHB3P54753 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
EPHB3P54753 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
EPHB3P54753 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
EPHB3P54753 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
EPHB3P54753 CYP2AB1P-202ENST00000454440 1456 ntBASIC16.51■□□□□ 0.23
EPHB3P54753 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
EPHB3P54753 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
EPHB3P54753 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC16.51■□□□□ 0.23
EPHB3P54753 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC16.51■□□□□ 0.23
EPHB3P54753 CROCCP4-201ENST00000457096 498 ntBASIC16.51■□□□□ 0.23
EPHB3P54753 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
EPHB3P54753 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
EPHB3P54753 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
EPHB3P54753 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
EPHB3P54753 AC000095.1-201ENST00000603208 874 ntBASIC16.51■□□□□ 0.23
EPHB3P54753 AL022328.1-201ENST00000610050 478 ntBASIC16.51■□□□□ 0.23
EPHB3P54753 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC16.51■□□□□ 0.23
EPHB3P54753 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC16.51■□□□□ 0.23
EPHB3P54753 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
EPHB3P54753 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
EPHB3P54753 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC16.51■□□□□ 0.23
EPHB3P54753 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
EPHB3P54753 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
EPHB3P54753 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
EPHB3P54753 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC16.51■□□□□ 0.23
EPHB3P54753 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
EPHB3P54753 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC16.51■□□□□ 0.23
EPHB3P54753 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.51■□□□□ 0.23
EPHB3P54753 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
EPHB3P54753 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.51■□□□□ 0.23
EPHB3P54753 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms