Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MRE11P49959 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MRE11P49959 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MRE11P49959 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
MRE11P49959 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
MRE11P49959 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
MRE11P49959 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC18.65■□□□□ 0.58
MRE11P49959 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC18.64■□□□□ 0.58
MRE11P49959 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC18.64■□□□□ 0.58
MRE11P49959 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC18.64■□□□□ 0.58
MRE11P49959 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.58
MRE11P49959 MROH4P-201ENST00000431302 1578 ntBASIC18.64■□□□□ 0.58
MRE11P49959 FGD5P1-202ENST00000614866 2498 ntBASIC18.64■□□□□ 0.58
MRE11P49959 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
MRE11P49959 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
MRE11P49959 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MRE11P49959 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
MRE11P49959 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
MRE11P49959 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
MRE11P49959 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC18.64■□□□□ 0.57
MRE11P49959 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
MRE11P49959 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MRE11P49959 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MRE11P49959 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MRE11P49959 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
MRE11P49959 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC18.64■□□□□ 0.57
MRE11P49959 ACTG1P4-201ENST00000425123 1122 ntBASIC18.64■□□□□ 0.57
MRE11P49959 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC18.64■□□□□ 0.57
MRE11P49959 MINOS1P3-201ENST00000457048 203 ntBASIC18.64■□□□□ 0.57
MRE11P49959 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
MRE11P49959 RNA5SP416-201ENST00000516838 111 ntBASIC18.64■□□□□ 0.57
MRE11P49959 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC18.64■□□□□ 0.57
MRE11P49959 AP002472.1-201ENST00000577490 586 ntBASIC18.64■□□□□ 0.57
MRE11P49959 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC18.64■□□□□ 0.57
MRE11P49959 LITAF-220ENST00000620789 692 ntTSL 5 BASIC18.64■□□□□ 0.57
MRE11P49959 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC18.64■□□□□ 0.57
MRE11P49959 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MRE11P49959 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MRE11P49959 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MRE11P49959 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
MRE11P49959 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
MRE11P49959 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MRE11P49959 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
MRE11P49959 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.64■□□□□ 0.57
MRE11P49959 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
MRE11P49959 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MRE11P49959 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MRE11P49959 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MRE11P49959 AC105250.1-201ENST00000509378 2057 ntBASIC18.64■□□□□ 0.57
MRE11P49959 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
MRE11P49959 AC008677.1-201ENST00000519230 1561 ntBASIC18.64■□□□□ 0.57
MRE11P49959 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC18.64■□□□□ 0.57
MRE11P49959 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
MRE11P49959 AC005252.3-201ENST00000623855 2258 ntBASIC18.63■□□□□ 0.57
MRE11P49959 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC18.63■□□□□ 0.57
MRE11P49959 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
MRE11P49959 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MRE11P49959 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC18.63■□□□□ 0.57
MRE11P49959 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC18.63■□□□□ 0.57
MRE11P49959 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MRE11P49959 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MRE11P49959 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
MRE11P49959 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
MRE11P49959 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
MRE11P49959 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC18.63■□□□□ 0.57
MRE11P49959 AC079781.5-202ENST00000641784 3743 ntBASIC18.63■□□□□ 0.57
MRE11P49959 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
MRE11P49959 OS9-204ENST00000389146 2091 ntTSL 2 BASIC18.63■□□□□ 0.57
MRE11P49959 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MRE11P49959 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MRE11P49959 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MRE11P49959 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MRE11P49959 KLF4P1-201ENST00000412782 1185 ntBASIC18.63■□□□□ 0.57
MRE11P49959 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
MRE11P49959 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC18.63■□□□□ 0.57
MRE11P49959 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MRE11P49959 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC18.63■□□□□ 0.57
MRE11P49959 Z83851.2-201ENST00000609564 659 ntBASIC18.63■□□□□ 0.57
MRE11P49959 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
MRE11P49959 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
MRE11P49959 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
MRE11P49959 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
MRE11P49959 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
MRE11P49959 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MRE11P49959 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MRE11P49959 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MRE11P49959 CELP-203ENST00000624767 2414 ntTSL 5 BASIC18.63■□□□□ 0.57
MRE11P49959 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC18.63■□□□□ 0.57
MRE11P49959 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
MRE11P49959 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
MRE11P49959 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC18.63■□□□□ 0.57
MRE11P49959 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
MRE11P49959 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
MRE11P49959 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MRE11P49959 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
MRE11P49959 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC18.63■□□□□ 0.57
MRE11P49959 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MRE11P49959 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MRE11P49959 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
MRE11P49959 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms