Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIG3P49916 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC16.81■□□□□ 0.28
LIG3P49916 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIG3P49916 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIG3P49916 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC16.81■□□□□ 0.28
LIG3P49916 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
LIG3P49916 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIG3P49916 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
LIG3P49916 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIG3P49916 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIG3P49916 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIG3P49916 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIG3P49916 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIG3P49916 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LIG3P49916 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIG3P49916 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIG3P49916 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIG3P49916 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC16.81■□□□□ 0.28
LIG3P49916 POLL-217ENST00000628479 1953 ntTSL 5 BASIC16.81■□□□□ 0.28
LIG3P49916 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LIG3P49916 AC002056.1-201ENST00000395613 760 ntBASIC16.81■□□□□ 0.28
LIG3P49916 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC16.81■□□□□ 0.28
LIG3P49916 ACTG1P14-201ENST00000446382 1122 ntBASIC16.81■□□□□ 0.28
LIG3P49916 CFL1-202ENST00000524553 860 ntTSL 2 BASIC16.81■□□□□ 0.28
LIG3P49916 THTPA-204ENST00000554970 569 ntTSL 4 BASIC16.81■□□□□ 0.28
LIG3P49916 THTPA-206ENST00000556015 535 ntTSL 3 BASIC16.81■□□□□ 0.28
LIG3P49916 CD7-202ENST00000578509 925 ntTSL 3 BASIC16.81■□□□□ 0.28
LIG3P49916 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC16.81■□□□□ 0.28
LIG3P49916 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC16.81■□□□□ 0.28
LIG3P49916 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIG3P49916 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC16.81■□□□□ 0.28
LIG3P49916 AP001350.2-201ENST00000625104 1094 ntBASIC16.81■□□□□ 0.28
LIG3P49916 AC079781.4-201ENST00000641908 219 ntBASIC16.81■□□□□ 0.28
LIG3P49916 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIG3P49916 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIG3P49916 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIG3P49916 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
LIG3P49916 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIG3P49916 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIG3P49916 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIG3P49916 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC16.81■□□□□ 0.28
LIG3P49916 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
LIG3P49916 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIG3P49916 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIG3P49916 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIG3P49916 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIG3P49916 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.81■□□□□ 0.28
LIG3P49916 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
LIG3P49916 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
LIG3P49916 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIG3P49916 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LIG3P49916 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIG3P49916 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.8■□□□□ 0.28
LIG3P49916 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIG3P49916 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
LIG3P49916 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
LIG3P49916 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.8■□□□□ 0.28
LIG3P49916 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.8■□□□□ 0.28
LIG3P49916 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC16.8■□□□□ 0.28
LIG3P49916 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIG3P49916 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC16.8■□□□□ 0.28
LIG3P49916 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC16.8■□□□□ 0.28
LIG3P49916 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIG3P49916 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIG3P49916 AL137784.3-201ENST00000623858 2288 ntBASIC16.8■□□□□ 0.28
LIG3P49916 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.8■□□□□ 0.28
LIG3P49916 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIG3P49916 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LIG3P49916 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
LIG3P49916 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC16.8■□□□□ 0.28
LIG3P49916 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC16.8■□□□□ 0.28
LIG3P49916 DNAJB3-202ENST00000449667 1266 ntBASIC16.8■□□□□ 0.28
LIG3P49916 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LIG3P49916 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
LIG3P49916 PUS1-205ENST00000535067 838 ntTSL 3 BASIC16.8■□□□□ 0.28
LIG3P49916 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
LIG3P49916 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC16.8■□□□□ 0.28
LIG3P49916 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC16.8■□□□□ 0.28
LIG3P49916 AP001160.2-201ENST00000596071 487 ntBASIC16.8■□□□□ 0.28
LIG3P49916 AL596442.2-201ENST00000610240 980 ntBASIC16.8■□□□□ 0.28
LIG3P49916 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC16.8■□□□□ 0.28
LIG3P49916 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LIG3P49916 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LIG3P49916 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC16.8■□□□□ 0.28
LIG3P49916 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIG3P49916 UCKL1-AS1-201ENST00000623569 3602 ntBASIC16.8■□□□□ 0.28
LIG3P49916 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIG3P49916 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LIG3P49916 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LIG3P49916 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
LIG3P49916 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LIG3P49916 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
LIG3P49916 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
LIG3P49916 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
LIG3P49916 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIG3P49916 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIG3P49916 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIG3P49916 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIG3P49916 AC007292.2-201ENST00000593524 1812 ntBASIC16.8■□□□□ 0.28
LIG3P49916 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms