Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC18.3■□□□□ 0.52
CTCFP49711 RPSAP31-201ENST00000416648 895 ntBASIC18.3■□□□□ 0.52
CTCFP49711 IDS-203ENST00000428056 1213 ntTSL 2 BASIC18.3■□□□□ 0.52
CTCFP49711 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC18.3■□□□□ 0.52
CTCFP49711 RN7SL181P-201ENST00000462921 277 ntBASIC18.3■□□□□ 0.52
CTCFP49711 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC18.3■□□□□ 0.52
CTCFP49711 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC18.3■□□□□ 0.52
CTCFP49711 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC18.3■□□□□ 0.52
CTCFP49711 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC18.3■□□□□ 0.52
CTCFP49711 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
CTCFP49711 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CTCFP49711 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC18.3■□□□□ 0.52
CTCFP49711 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CTCFP49711 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CTCFP49711 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CTCFP49711 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC18.3■□□□□ 0.52
CTCFP49711 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC18.3■□□□□ 0.52
CTCFP49711 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
CTCFP49711 AP001094.4-201ENST00000579008 2176 ntBASIC18.3■□□□□ 0.52
CTCFP49711 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CTCFP49711 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CTCFP49711 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
CTCFP49711 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CTCFP49711 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC18.29■□□□□ 0.52
CTCFP49711 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC18.29■□□□□ 0.52
CTCFP49711 AC018695.7-201ENST00000624587 2492 ntBASIC18.29■□□□□ 0.52
CTCFP49711 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CTCFP49711 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC18.29■□□□□ 0.52
CTCFP49711 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CTCFP49711 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CTCFP49711 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CTCFP49711 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CTCFP49711 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CTCFP49711 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
CTCFP49711 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
CTCFP49711 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CTCFP49711 FAU-202ENST00000434372 533 ntTSL 2 BASIC18.29■□□□□ 0.52
CTCFP49711 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC18.29■□□□□ 0.52
CTCFP49711 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC18.29■□□□□ 0.52
CTCFP49711 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC18.29■□□□□ 0.52
CTCFP49711 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CTCFP49711 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC18.29■□□□□ 0.52
CTCFP49711 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CTCFP49711 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC18.29■□□□□ 0.52
CTCFP49711 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC18.29■□□□□ 0.52
CTCFP49711 DGAT2L7P-201ENST00000602462 744 ntBASIC18.29■□□□□ 0.52
CTCFP49711 AC132938.4-201ENST00000623835 848 ntBASIC18.29■□□□□ 0.52
CTCFP49711 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC18.29■□□□□ 0.52
CTCFP49711 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC18.29■□□□□ 0.52
CTCFP49711 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CTCFP49711 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CTCFP49711 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC18.29■□□□□ 0.52
CTCFP49711 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC18.29■□□□□ 0.52
CTCFP49711 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CTCFP49711 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CTCFP49711 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CTCFP49711 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC18.28■□□□□ 0.52
CTCFP49711 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CTCFP49711 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC18.28■□□□□ 0.52
CTCFP49711 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
CTCFP49711 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CTCFP49711 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTCFP49711 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTCFP49711 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTCFP49711 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTCFP49711 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTCFP49711 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
CTCFP49711 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
CTCFP49711 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTCFP49711 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
CTCFP49711 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
CTCFP49711 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTCFP49711 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CTCFP49711 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
CTCFP49711 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTCFP49711 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CTCFP49711 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC18.28■□□□□ 0.52
CTCFP49711 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC18.28■□□□□ 0.52
CTCFP49711 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC18.28■□□□□ 0.52
CTCFP49711 AC010234.1-201ENST00000494599 870 ntBASIC18.28■□□□□ 0.52
CTCFP49711 CTBP2P4-201ENST00000513884 920 ntBASIC18.28■□□□□ 0.52
CTCFP49711 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
CTCFP49711 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CTCFP49711 AC132192.2-201ENST00000596206 1147 ntBASIC18.28■□□□□ 0.52
CTCFP49711 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTCFP49711 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC18.28■□□□□ 0.52
CTCFP49711 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC18.28■□□□□ 0.52
CTCFP49711 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC18.28■□□□□ 0.52
CTCFP49711 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC18.28■□□□□ 0.52
CTCFP49711 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
CTCFP49711 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC18.28■□□□□ 0.52
CTCFP49711 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC18.28■□□□□ 0.52
CTCFP49711 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTCFP49711 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTCFP49711 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTCFP49711 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC18.28■□□□□ 0.52
CTCFP49711 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CTCFP49711 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTCFP49711 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTCFP49711 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms