Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC188H7C350 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC188H7C350 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC16.57■□□□□ 0.24
CCDC188H7C350 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC16.57■□□□□ 0.24
CCDC188H7C350 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC16.57■□□□□ 0.24
CCDC188H7C350 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC16.57■□□□□ 0.24
CCDC188H7C350 KRT18P67-201ENST00000432816 1264 ntBASIC16.57■□□□□ 0.24
CCDC188H7C350 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC16.57■□□□□ 0.24
CCDC188H7C350 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC16.57■□□□□ 0.24
CCDC188H7C350 AC024267.1-201ENST00000582320 895 ntBASIC16.57■□□□□ 0.24
CCDC188H7C350 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC188H7C350 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC188H7C350 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC188H7C350 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
CCDC188H7C350 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC188H7C350 AC007191.1-201ENST00000623179 2995 ntBASIC16.57■□□□□ 0.24
CCDC188H7C350 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC188H7C350 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC188H7C350 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC188H7C350 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
CCDC188H7C350 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC188H7C350 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC188H7C350 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC188H7C350 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC188H7C350 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
CCDC188H7C350 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC188H7C350 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC16.57■□□□□ 0.24
CCDC188H7C350 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
CCDC188H7C350 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC16.56■□□□□ 0.24
CCDC188H7C350 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC188H7C350 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
CCDC188H7C350 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC188H7C350 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC16.56■□□□□ 0.24
CCDC188H7C350 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC188H7C350 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC188H7C350 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC188H7C350 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC16.56■□□□□ 0.24
CCDC188H7C350 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC16.56■□□□□ 0.24
CCDC188H7C350 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC16.56■□□□□ 0.24
CCDC188H7C350 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC188H7C350 LINC00528-201ENST00000600723 2160 ntBASIC16.56■□□□□ 0.24
CCDC188H7C350 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC188H7C350 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC188H7C350 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC16.56■□□□□ 0.24
CCDC188H7C350 CRYGEP-201ENST00000412192 528 ntBASIC16.56■□□□□ 0.24
CCDC188H7C350 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC16.56■□□□□ 0.24
CCDC188H7C350 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC16.56■□□□□ 0.24
CCDC188H7C350 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC16.56■□□□□ 0.24
CCDC188H7C350 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC16.56■□□□□ 0.24
CCDC188H7C350 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC16.56■□□□□ 0.24
CCDC188H7C350 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC16.56■□□□□ 0.24
CCDC188H7C350 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC16.56■□□□□ 0.24
CCDC188H7C350 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
CCDC188H7C350 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC16.56■□□□□ 0.24
CCDC188H7C350 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC188H7C350 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
CCDC188H7C350 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
CCDC188H7C350 AC007064.4-201ENST00000637740 555 ntBASIC16.56■□□□□ 0.24
CCDC188H7C350 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
CCDC188H7C350 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
CCDC188H7C350 AC023024.2-201ENST00000623561 1993 ntBASIC16.56■□□□□ 0.24
CCDC188H7C350 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC188H7C350 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC16.56■□□□□ 0.24
CCDC188H7C350 LINC00552-201ENST00000625151 2579 ntBASIC16.56■□□□□ 0.24
CCDC188H7C350 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC188H7C350 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC188H7C350 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC188H7C350 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC188H7C350 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
CCDC188H7C350 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC16.56■□□□□ 0.24
CCDC188H7C350 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC188H7C350 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC188H7C350 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC188H7C350 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC188H7C350 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC188H7C350 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
CCDC188H7C350 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
CCDC188H7C350 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC16.55■□□□□ 0.24
CCDC188H7C350 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC188H7C350 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC188H7C350 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC188H7C350 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC188H7C350 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC16.55■□□□□ 0.24
CCDC188H7C350 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC16.55■□□□□ 0.24
CCDC188H7C350 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC188H7C350 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC188H7C350 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC188H7C350 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC188H7C350 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC188H7C350 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC188H7C350 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC16.55■□□□□ 0.24
CCDC188H7C350 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC16.55■□□□□ 0.24
CCDC188H7C350 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC188H7C350 HCG4B-203ENST00000450128 991 ntBASIC16.55■□□□□ 0.24
CCDC188H7C350 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
CCDC188H7C350 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC16.55■□□□□ 0.24
CCDC188H7C350 AC061975.2-201ENST00000581722 295 ntBASIC16.55■□□□□ 0.24
CCDC188H7C350 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC16.55■□□□□ 0.24
CCDC188H7C350 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
CCDC188H7C350 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms