Protein–RNA interactions for Protein: X5D2U9

HLA-DRB4, HLA class II histocompatibility antigen, DR beta 4 chain, humanhuman

Predictions only

Length 266 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DRB4X5D2U9 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC12.07□□□□□ -0.48
HLA-DRB4X5D2U9 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DRB4X5D2U9 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC12.07□□□□□ -0.48
HLA-DRB4X5D2U9 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC12.07□□□□□ -0.48
HLA-DRB4X5D2U9 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DRB4X5D2U9 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC12.07□□□□□ -0.48
HLA-DRB4X5D2U9 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC12.07□□□□□ -0.48
HLA-DRB4X5D2U9 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
HLA-DRB4X5D2U9 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC12.07□□□□□ -0.48
HLA-DRB4X5D2U9 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DRB4X5D2U9 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DRB4X5D2U9 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DRB4X5D2U9 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DRB4X5D2U9 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DRB4X5D2U9 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DRB4X5D2U9 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC12.07□□□□□ -0.48
HLA-DRB4X5D2U9 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC12.07□□□□□ -0.48
HLA-DRB4X5D2U9 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DRB4X5D2U9 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
HLA-DRB4X5D2U9 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DRB4X5D2U9 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 UPF3AP3-201ENST00000420996 769 ntBASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 AC142381.1-201ENST00000426099 345 ntBASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 CCND1-203ENST00000536559 553 ntTSL 3 BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 CALM1-205ENST00000553542 877 ntTSL 5 BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 AP000842.3-202ENST00000569238 1080 ntBASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 MIR4469-201ENST00000583919 79 ntBASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 AC010327.4-202ENST00000591484 748 ntBASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 MIR4321-201ENST00000592276 80 ntBASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 BLK-205ENST00000529894 2017 ntTSL 5 BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC12.06□□□□□ -0.48
HLA-DRB4X5D2U9 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms