Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 LINC00554-201ENST00000564841 3011 ntBASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 AC105250.1-201ENST00000509378 2057 ntBASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 TIMM8BP1-201ENST00000452384 211 ntBASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 AL139010.1-201ENST00000454878 894 ntBASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 MTDHP5-201ENST00000598980 586 ntBASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 HYMAI-201ENST00000635591 3347 ntBASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 AL136982.4-201ENST00000437689 1740 ntBASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HIF3AQ9Y2N7 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC14.4□□□□□ -0.11
HIF3AQ9Y2N7 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.11
HIF3AQ9Y2N7 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 AL022342.1-201ENST00000400363 863 ntBASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 EEF1DP4-201ENST00000446006 880 ntBASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 136.4 ms