Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDH9Q9HC56 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
PCDH9Q9HC56 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC16.47■□□□□ 0.23
PCDH9Q9HC56 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDH9Q9HC56 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDH9Q9HC56 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PCDH9Q9HC56 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC16.47■□□□□ 0.23
PCDH9Q9HC56 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PCDH9Q9HC56 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC16.47■□□□□ 0.23
PCDH9Q9HC56 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
PCDH9Q9HC56 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PCDH9Q9HC56 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC16.47■□□□□ 0.23
PCDH9Q9HC56 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC16.47■□□□□ 0.23
PCDH9Q9HC56 AC024267.1-201ENST00000582320 895 ntBASIC16.47■□□□□ 0.23
PCDH9Q9HC56 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC16.47■□□□□ 0.23
PCDH9Q9HC56 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDH9Q9HC56 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
PCDH9Q9HC56 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
PCDH9Q9HC56 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDH9Q9HC56 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC16.47■□□□□ 0.23
PCDH9Q9HC56 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDH9Q9HC56 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC16.47■□□□□ 0.23
PCDH9Q9HC56 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
PCDH9Q9HC56 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDH9Q9HC56 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC16.47■□□□□ 0.23
PCDH9Q9HC56 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDH9Q9HC56 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
PCDH9Q9HC56 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 ZBTB45P2-201ENST00000452245 1531 ntBASIC16.46■□□□□ 0.23
PCDH9Q9HC56 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 FAM58DP-201ENST00000428076 619 ntBASIC16.46■□□□□ 0.23
PCDH9Q9HC56 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 PAM16-215ENST00000577031 548 ntTSL 4 BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 METTL23-205ENST00000588302 925 ntTSL 5 BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 HADH-212ENST00000638621 741 ntTSL 5 BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
PCDH9Q9HC56 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC16.46■□□□□ 0.22
PCDH9Q9HC56 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.22
PCDH9Q9HC56 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
PCDH9Q9HC56 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 FLII-221ENST00000578558 2377 ntTSL 5 BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 AL691432.1-201ENST00000596308 1422 ntBASIC16.45■□□□□ 0.22
PCDH9Q9HC56 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 AC023141.5-201ENST00000458585 616 ntBASIC16.45■□□□□ 0.22
PCDH9Q9HC56 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC16.45■□□□□ 0.22
PCDH9Q9HC56 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms