Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
CHMP4AQ9BY43 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP4AQ9BY43 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC20.23■□□□□ 0.83
CHMP4AQ9BY43 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP4AQ9BY43 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP4AQ9BY43 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC20.23■□□□□ 0.83
CHMP4AQ9BY43 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP4AQ9BY43 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP4AQ9BY43 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC20.23■□□□□ 0.83
CHMP4AQ9BY43 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 PGR-209ENST00000617858 2816 ntTSL 5 BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 AC005225.4-201ENST00000557330 545 ntBASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 AL603832.2-201ENST00000566195 2125 ntBASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP4AQ9BY43 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP4AQ9BY43 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
CHMP4AQ9BY43 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
CHMP4AQ9BY43 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP4AQ9BY43 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC20.21■□□□□ 0.83
CHMP4AQ9BY43 CU639417.3-201ENST00000624240 1404 ntBASIC20.21■□□□□ 0.83
CHMP4AQ9BY43 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP4AQ9BY43 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
CHMP4AQ9BY43 AL513477.1-201ENST00000602865 2407 ntBASIC20.21■□□□□ 0.83
CHMP4AQ9BY43 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC20.21■□□□□ 0.83
CHMP4AQ9BY43 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
CHMP4AQ9BY43 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
CHMP4AQ9BY43 METTL26-204ENST00000397665 558 ntTSL 2 BASIC20.21■□□□□ 0.83
CHMP4AQ9BY43 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
CHMP4AQ9BY43 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC20.21■□□□□ 0.83
CHMP4AQ9BY43 AC011495.1-201ENST00000498085 584 ntBASIC20.21■□□□□ 0.83
CHMP4AQ9BY43 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC20.21■□□□□ 0.83
CHMP4AQ9BY43 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC20.21■□□□□ 0.83
CHMP4AQ9BY43 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC20.21■□□□□ 0.83
CHMP4AQ9BY43 MIR4313-201ENST00000580760 101 ntBASIC20.21■□□□□ 0.83
CHMP4AQ9BY43 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC20.21■□□□□ 0.83
CHMP4AQ9BY43 AC000095.1-201ENST00000603208 874 ntBASIC20.21■□□□□ 0.83
CHMP4AQ9BY43 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
CHMP4AQ9BY43 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP4AQ9BY43 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP4AQ9BY43 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
CHMP4AQ9BY43 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP4AQ9BY43 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP4AQ9BY43 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
CHMP4AQ9BY43 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP4AQ9BY43 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP4AQ9BY43 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC20.2■□□□□ 0.82
CHMP4AQ9BY43 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CHMP4AQ9BY43 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CHMP4AQ9BY43 AC046158.3-201ENST00000624947 2558 ntBASIC20.2■□□□□ 0.82
CHMP4AQ9BY43 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
CHMP4AQ9BY43 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CHMP4AQ9BY43 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CHMP4AQ9BY43 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC20.2■□□□□ 0.82
CHMP4AQ9BY43 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
CHMP4AQ9BY43 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CHMP4AQ9BY43 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC20.2■□□□□ 0.82
CHMP4AQ9BY43 MYCLP2-201ENST00000449268 967 ntBASIC20.2■□□□□ 0.82
CHMP4AQ9BY43 AL589987.1-201ENST00000453380 819 ntBASIC20.2■□□□□ 0.82
CHMP4AQ9BY43 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC20.2■□□□□ 0.82
CHMP4AQ9BY43 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms