Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 LINC02447-202ENST00000501888 2146 ntBASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 SLC25A47P1-201ENST00000531577 414 ntBASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 AC120045.2-201ENST00000567334 178 ntBASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 NAA38-206ENST00000576384 424 ntTSL 2 BASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 AC000095.1-201ENST00000603208 874 ntBASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PAAF1Q9BRP4 AC010491.1-201ENST00000563101 2797 ntBASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 RAC2-202ENST00000401529 569 ntTSL 4 BASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 ACTG1P3-201ENST00000431775 1114 ntBASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 KRT18P43-201ENST00000469825 1281 ntBASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 TDH-203ENST00000531764 1110 ntBASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 USE1-206ENST00000595101 1776 ntTSL 2 BASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PAAF1Q9BRP4 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
PAAF1Q9BRP4 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.29
PAAF1Q9BRP4 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PAAF1Q9BRP4 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PAAF1Q9BRP4 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PAAF1Q9BRP4 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
PAAF1Q9BRP4 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
PAAF1Q9BRP4 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PAAF1Q9BRP4 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.83■□□□□ 0.28
PAAF1Q9BRP4 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PAAF1Q9BRP4 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC16.83■□□□□ 0.28
PAAF1Q9BRP4 MGST3-203ENST00000367885 680 ntTSL 2 BASIC16.83■□□□□ 0.28
PAAF1Q9BRP4 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
PAAF1Q9BRP4 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PAAF1Q9BRP4 C1QBPP1-201ENST00000400117 770 ntBASIC16.83■□□□□ 0.28
PAAF1Q9BRP4 RPS2P32-201ENST00000439199 892 ntBASIC16.83■□□□□ 0.28
PAAF1Q9BRP4 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC16.83■□□□□ 0.28
PAAF1Q9BRP4 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC16.83■□□□□ 0.28
PAAF1Q9BRP4 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
PAAF1Q9BRP4 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PAAF1Q9BRP4 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.83■□□□□ 0.28
PAAF1Q9BRP4 CLUHP6-201ENST00000580789 941 ntBASIC16.83■□□□□ 0.28
PAAF1Q9BRP4 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC16.83■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms