Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
VPS13AQ96RL7 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC15.41■□□□□ 0.06
VPS13AQ96RL7 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC15.41■□□□□ 0.06
VPS13AQ96RL7 AL161670.2-201ENST00000557650 1227 ntBASIC15.41■□□□□ 0.06
VPS13AQ96RL7 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC15.41■□□□□ 0.06
VPS13AQ96RL7 AC027139.1-201ENST00000565286 951 ntBASIC15.41■□□□□ 0.06
VPS13AQ96RL7 UBL5-208ENST00000593087 320 ntTSL 3 BASIC15.41■□□□□ 0.06
VPS13AQ96RL7 BNIP3P13-201ENST00000599968 566 ntBASIC15.41■□□□□ 0.06
VPS13AQ96RL7 AC091544.8-201ENST00000619490 361 ntBASIC15.41■□□□□ 0.06
VPS13AQ96RL7 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
VPS13AQ96RL7 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
VPS13AQ96RL7 KRT8P35-201ENST00000483942 1338 ntBASIC15.41■□□□□ 0.06
VPS13AQ96RL7 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS13AQ96RL7 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS13AQ96RL7 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS13AQ96RL7 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS13AQ96RL7 HIST2H2BB-201ENST00000449108 381 ntBASIC15.4■□□□□ 0.06
VPS13AQ96RL7 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VPS13AQ96RL7 AL592424.1-201ENST00000563624 1536 ntBASIC15.4■□□□□ 0.06
VPS13AQ96RL7 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
VPS13AQ96RL7 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS13AQ96RL7 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
VPS13AQ96RL7 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC15.4■□□□□ 0.06
VPS13AQ96RL7 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
VPS13AQ96RL7 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS13AQ96RL7 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS13AQ96RL7 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC15.4■□□□□ 0.06
VPS13AQ96RL7 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC15.4■□□□□ 0.06
VPS13AQ96RL7 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS13AQ96RL7 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VPS13AQ96RL7 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC15.4■□□□□ 0.06
VPS13AQ96RL7 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC15.4■□□□□ 0.06
VPS13AQ96RL7 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC15.4■□□□□ 0.06
VPS13AQ96RL7 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC15.4■□□□□ 0.06
VPS13AQ96RL7 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS13AQ96RL7 AL359258.3-201ENST00000622910 2331 ntBASIC15.4■□□□□ 0.06
VPS13AQ96RL7 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
VPS13AQ96RL7 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS13AQ96RL7 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS13AQ96RL7 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VPS13AQ96RL7 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC15.4■□□□□ 0.06
VPS13AQ96RL7 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC15.4■□□□□ 0.06
VPS13AQ96RL7 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS13AQ96RL7 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS13AQ96RL7 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VPS13AQ96RL7 AC245100.5-201ENST00000452108 331 ntBASIC15.4■□□□□ 0.06
VPS13AQ96RL7 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
VPS13AQ96RL7 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
VPS13AQ96RL7 AC103988.2-201ENST00000561804 725 ntBASIC15.4■□□□□ 0.06
VPS13AQ96RL7 RPL17P45-201ENST00000586289 509 ntBASIC15.4■□□□□ 0.06
VPS13AQ96RL7 AC080080.1-201ENST00000625121 2420 ntBASIC15.4■□□□□ 0.06
VPS13AQ96RL7 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VPS13AQ96RL7 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
VPS13AQ96RL7 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
VPS13AQ96RL7 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13AQ96RL7 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13AQ96RL7 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13AQ96RL7 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13AQ96RL7 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
VPS13AQ96RL7 AL118516.1-201ENST00000564152 670 ntBASIC15.39■□□□□ 0.05
VPS13AQ96RL7 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC15.39■□□□□ 0.05
VPS13AQ96RL7 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC15.39■□□□□ 0.05
VPS13AQ96RL7 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13AQ96RL7 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13AQ96RL7 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13AQ96RL7 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13AQ96RL7 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC15.39■□□□□ 0.05
VPS13AQ96RL7 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
VPS13AQ96RL7 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC15.39■□□□□ 0.05
VPS13AQ96RL7 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
VPS13AQ96RL7 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC15.39■□□□□ 0.05
VPS13AQ96RL7 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13AQ96RL7 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13AQ96RL7 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13AQ96RL7 PGGT1BP2-201ENST00000398621 1028 ntBASIC15.39■□□□□ 0.05
VPS13AQ96RL7 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13AQ96RL7 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC15.39■□□□□ 0.05
VPS13AQ96RL7 AC026410.1-201ENST00000507366 1101 ntBASIC15.39■□□□□ 0.05
VPS13AQ96RL7 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
VPS13AQ96RL7 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13AQ96RL7 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC15.39■□□□□ 0.05
VPS13AQ96RL7 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC15.39■□□□□ 0.05
VPS13AQ96RL7 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
VPS13AQ96RL7 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC15.39■□□□□ 0.05
VPS13AQ96RL7 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13AQ96RL7 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13AQ96RL7 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13AQ96RL7 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VPS13AQ96RL7 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
VPS13AQ96RL7 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
VPS13AQ96RL7 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
VPS13AQ96RL7 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
VPS13AQ96RL7 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC15.38■□□□□ 0.05
VPS13AQ96RL7 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
VPS13AQ96RL7 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
VPS13AQ96RL7 AC007881.3-201ENST00000608897 607 ntBASIC15.38■□□□□ 0.05
VPS13AQ96RL7 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC15.38■□□□□ 0.05
VPS13AQ96RL7 AC132938.4-201ENST00000623835 848 ntBASIC15.38■□□□□ 0.05
VPS13AQ96RL7 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC15.38■□□□□ 0.05
VPS13AQ96RL7 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms