Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC42Q96M95 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC42Q96M95 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC17.23■□□□□ 0.35
CCDC42Q96M95 AC004870.1-201ENST00000315132 882 ntBASIC17.23■□□□□ 0.35
CCDC42Q96M95 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC42Q96M95 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC42Q96M95 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC17.23■□□□□ 0.35
CCDC42Q96M95 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC17.23■□□□□ 0.35
CCDC42Q96M95 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC17.23■□□□□ 0.35
CCDC42Q96M95 IGHV3-22-201ENST00000520721 359 ntBASIC17.23■□□□□ 0.35
CCDC42Q96M95 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC17.23■□□□□ 0.35
CCDC42Q96M95 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC17.23■□□□□ 0.35
CCDC42Q96M95 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC17.23■□□□□ 0.35
CCDC42Q96M95 LITAF-211ENST00000572255 516 ntTSL 4 BASIC17.23■□□□□ 0.35
CCDC42Q96M95 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
CCDC42Q96M95 RN7SL510P-201ENST00000581311 263 ntBASIC17.23■□□□□ 0.35
CCDC42Q96M95 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC42Q96M95 AL031008.1-201ENST00000619963 541 ntBASIC17.23■□□□□ 0.35
CCDC42Q96M95 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC17.23■□□□□ 0.35
CCDC42Q96M95 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC17.23■□□□□ 0.35
CCDC42Q96M95 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC17.23■□□□□ 0.35
CCDC42Q96M95 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC42Q96M95 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC42Q96M95 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC42Q96M95 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC42Q96M95 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC17.23■□□□□ 0.35
CCDC42Q96M95 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC17.23■□□□□ 0.35
CCDC42Q96M95 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC42Q96M95 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC17.23■□□□□ 0.35
CCDC42Q96M95 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC17.23■□□□□ 0.35
CCDC42Q96M95 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CCDC42Q96M95 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC17.23■□□□□ 0.35
CCDC42Q96M95 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC42Q96M95 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC42Q96M95 BCAR1-209ENST00000546196 1340 ntBASIC17.22■□□□□ 0.35
CCDC42Q96M95 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC42Q96M95 POLL-217ENST00000628479 1953 ntTSL 5 BASIC17.22■□□□□ 0.35
CCDC42Q96M95 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
CCDC42Q96M95 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC17.22■□□□□ 0.35
CCDC42Q96M95 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC42Q96M95 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC42Q96M95 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC42Q96M95 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC42Q96M95 AC018892.3-201ENST00000623986 2499 ntBASIC17.22■□□□□ 0.35
CCDC42Q96M95 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC42Q96M95 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC42Q96M95 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC17.22■□□□□ 0.35
CCDC42Q96M95 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC42Q96M95 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC17.22■□□□□ 0.35
CCDC42Q96M95 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
CCDC42Q96M95 FAAHP1-202ENST00000446499 1238 ntBASIC17.22■□□□□ 0.35
CCDC42Q96M95 AC079776.4-201ENST00000511039 504 ntBASIC17.22■□□□□ 0.35
CCDC42Q96M95 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC42Q96M95 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC17.22■□□□□ 0.35
CCDC42Q96M95 AC243562.2-201ENST00000561247 970 ntBASIC17.22■□□□□ 0.35
CCDC42Q96M95 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC17.22■□□□□ 0.35
CCDC42Q96M95 AC004877.2-201ENST00000623941 599 ntBASIC17.22■□□□□ 0.35
CCDC42Q96M95 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC42Q96M95 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC17.22■□□□□ 0.35
CCDC42Q96M95 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC42Q96M95 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC42Q96M95 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
CCDC42Q96M95 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC42Q96M95 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC42Q96M95 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC42Q96M95 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC42Q96M95 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC17.21■□□□□ 0.35
CCDC42Q96M95 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
CCDC42Q96M95 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC42Q96M95 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CCDC42Q96M95 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC42Q96M95 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC42Q96M95 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC17.21■□□□□ 0.35
CCDC42Q96M95 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CCDC42Q96M95 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC42Q96M95 AC009090.5-201ENST00000624886 2285 ntBASIC17.21■□□□□ 0.35
CCDC42Q96M95 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CCDC42Q96M95 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC17.21■□□□□ 0.35
CCDC42Q96M95 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC42Q96M95 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC42Q96M95 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC42Q96M95 NARF-206ENST00000457415 1668 ntTSL 5 BASIC17.21■□□□□ 0.35
CCDC42Q96M95 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
CCDC42Q96M95 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC17.21■□□□□ 0.35
CCDC42Q96M95 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC17.21■□□□□ 0.35
CCDC42Q96M95 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC17.21■□□□□ 0.35
CCDC42Q96M95 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC42Q96M95 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC42Q96M95 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC17.21■□□□□ 0.35
CCDC42Q96M95 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CCDC42Q96M95 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC42Q96M95 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC42Q96M95 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
CCDC42Q96M95 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC17.21■□□□□ 0.35
CCDC42Q96M95 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC42Q96M95 GOLGA2P9-201ENST00000596977 1937 ntBASIC17.21■□□□□ 0.35
CCDC42Q96M95 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
CCDC42Q96M95 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.34
CCDC42Q96M95 FLII-221ENST00000578558 2377 ntTSL 5 BASIC17.21■□□□□ 0.34
CCDC42Q96M95 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms