Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC16.12■□□□□ 0.17
CHFRQ96EP1 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC16.12■□□□□ 0.17
CHFRQ96EP1 PTP4A1P2-201ENST00000546033 454 ntBASIC16.12■□□□□ 0.17
CHFRQ96EP1 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CHFRQ96EP1 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC16.12■□□□□ 0.17
CHFRQ96EP1 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHFRQ96EP1 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC16.12■□□□□ 0.17
CHFRQ96EP1 AC000095.1-201ENST00000603208 874 ntBASIC16.12■□□□□ 0.17
CHFRQ96EP1 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC16.12■□□□□ 0.17
CHFRQ96EP1 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC16.12■□□□□ 0.17
CHFRQ96EP1 MIR6869-201ENST00000619434 62 ntBASIC16.12■□□□□ 0.17
CHFRQ96EP1 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHFRQ96EP1 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
CHFRQ96EP1 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC16.12■□□□□ 0.17
CHFRQ96EP1 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC16.12■□□□□ 0.17
CHFRQ96EP1 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC16.12■□□□□ 0.17
CHFRQ96EP1 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHFRQ96EP1 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC16.12■□□□□ 0.17
CHFRQ96EP1 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC16.12■□□□□ 0.17
CHFRQ96EP1 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHFRQ96EP1 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHFRQ96EP1 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHFRQ96EP1 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CHFRQ96EP1 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CHFRQ96EP1 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CHFRQ96EP1 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHFRQ96EP1 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.11■□□□□ 0.17
CHFRQ96EP1 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHFRQ96EP1 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC16.11■□□□□ 0.17
CHFRQ96EP1 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CHFRQ96EP1 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHFRQ96EP1 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.11■□□□□ 0.17
CHFRQ96EP1 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
CHFRQ96EP1 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
CHFRQ96EP1 AL118508.1-201ENST00000613502 2345 ntBASIC16.11■□□□□ 0.17
CHFRQ96EP1 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHFRQ96EP1 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC16.11■□□□□ 0.17
CHFRQ96EP1 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHFRQ96EP1 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC16.11■□□□□ 0.17
CHFRQ96EP1 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC16.11■□□□□ 0.17
CHFRQ96EP1 AC106760.1-201ENST00000508690 800 ntBASIC16.11■□□□□ 0.17
CHFRQ96EP1 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC16.11■□□□□ 0.17
CHFRQ96EP1 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC16.11■□□□□ 0.17
CHFRQ96EP1 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC16.11■□□□□ 0.17
CHFRQ96EP1 GNRHR2-203ENST00000581100 1187 ntBASIC16.11■□□□□ 0.17
CHFRQ96EP1 GPX4-206ENST00000588919 803 ntTSL 2 BASIC16.11■□□□□ 0.17
CHFRQ96EP1 GPR182-203ENST00000622922 591 ntBASIC16.11■□□□□ 0.17
CHFRQ96EP1 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
CHFRQ96EP1 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
CHFRQ96EP1 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.11■□□□□ 0.17
CHFRQ96EP1 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
CHFRQ96EP1 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHFRQ96EP1 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHFRQ96EP1 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
CHFRQ96EP1 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC16.11■□□□□ 0.17
CHFRQ96EP1 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC16.11■□□□□ 0.17
CHFRQ96EP1 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHFRQ96EP1 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CHFRQ96EP1 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC16.1■□□□□ 0.17
CHFRQ96EP1 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC16.1■□□□□ 0.17
CHFRQ96EP1 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHFRQ96EP1 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHFRQ96EP1 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHFRQ96EP1 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
CHFRQ96EP1 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHFRQ96EP1 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHFRQ96EP1 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
CHFRQ96EP1 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
CHFRQ96EP1 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC16.1■□□□□ 0.17
CHFRQ96EP1 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CHFRQ96EP1 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CHFRQ96EP1 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
CHFRQ96EP1 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHFRQ96EP1 MPV17-206ENST00000402722 827 ntTSL 3 BASIC16.1■□□□□ 0.17
CHFRQ96EP1 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC16.1■□□□□ 0.17
CHFRQ96EP1 FO681548.1-201ENST00000455617 1132 ntBASIC16.1■□□□□ 0.17
CHFRQ96EP1 FTH1P14-201ENST00000482930 551 ntBASIC16.1■□□□□ 0.17
CHFRQ96EP1 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC16.1■□□□□ 0.17
CHFRQ96EP1 RNA5SP412-201ENST00000516234 123 ntBASIC16.1■□□□□ 0.17
CHFRQ96EP1 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC16.1■□□□□ 0.17
CHFRQ96EP1 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHFRQ96EP1 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC16.1■□□□□ 0.17
CHFRQ96EP1 AC244669.2-201ENST00000612320 853 ntBASIC16.1■□□□□ 0.17
CHFRQ96EP1 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHFRQ96EP1 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.1■□□□□ 0.17
CHFRQ96EP1 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC16.1■□□□□ 0.17
CHFRQ96EP1 TUBB1P2-201ENST00000422712 1306 ntBASIC16.1■□□□□ 0.17
CHFRQ96EP1 TUBB1P1-201ENST00000503144 1300 ntBASIC16.1■□□□□ 0.17
CHFRQ96EP1 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CHFRQ96EP1 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHFRQ96EP1 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
CHFRQ96EP1 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CHFRQ96EP1 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
CHFRQ96EP1 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHFRQ96EP1 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC16.1■□□□□ 0.17
CHFRQ96EP1 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
CHFRQ96EP1 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHFRQ96EP1 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CHFRQ96EP1 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CHFRQ96EP1 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms