Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CLHC1Q8NHS4 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CLHC1Q8NHS4 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CLHC1Q8NHS4 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC15.35■□□□□ 0.05
CLHC1Q8NHS4 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
CLHC1Q8NHS4 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC15.35■□□□□ 0.05
CLHC1Q8NHS4 BID-213ENST00000615414 2236 ntTSL 5 BASIC15.35■□□□□ 0.05
CLHC1Q8NHS4 AC007326.2-201ENST00000624224 7579 ntBASIC15.35■□□□□ 0.05
CLHC1Q8NHS4 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CLHC1Q8NHS4 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
CLHC1Q8NHS4 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
CLHC1Q8NHS4 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 AL355306.1-201ENST00000415580 579 ntBASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 SPTSSB-204ENST00000617024 1292 ntBASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 NME4-212ENST00000621774 904 ntTSL 3 BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 AC009090.5-201ENST00000624886 2285 ntBASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC15.34■□□□□ 0.05
CLHC1Q8NHS4 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC15.33■□□□□ 0.05
CLHC1Q8NHS4 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.05
CLHC1Q8NHS4 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.05
CLHC1Q8NHS4 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CLHC1Q8NHS4 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
CLHC1Q8NHS4 AC087481.3-201ENST00000602886 1894 ntBASIC15.33■□□□□ 0.05
CLHC1Q8NHS4 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC15.33■□□□□ 0.05
CLHC1Q8NHS4 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CLHC1Q8NHS4 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CLHC1Q8NHS4 TNRC18P2-201ENST00000417666 2714 ntBASIC15.33■□□□□ 0.05
CLHC1Q8NHS4 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
CLHC1Q8NHS4 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC15.33■□□□□ 0.04
CLHC1Q8NHS4 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CLHC1Q8NHS4 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.04
CLHC1Q8NHS4 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CLHC1Q8NHS4 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
CLHC1Q8NHS4 HNRNPA1P28-201ENST00000424481 961 ntBASIC15.33■□□□□ 0.04
CLHC1Q8NHS4 FAM58CP-201ENST00000435741 640 ntBASIC15.33■□□□□ 0.04
CLHC1Q8NHS4 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CLHC1Q8NHS4 AL591424.1-201ENST00000442569 1213 ntBASIC15.33■□□□□ 0.04
CLHC1Q8NHS4 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC15.33■□□□□ 0.04
CLHC1Q8NHS4 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC15.33■□□□□ 0.04
CLHC1Q8NHS4 AC105233.2-201ENST00000523697 349 ntBASIC15.33■□□□□ 0.04
CLHC1Q8NHS4 AF228730.5-201ENST00000530288 346 ntBASIC15.33■□□□□ 0.04
CLHC1Q8NHS4 AC027307.2-201ENST00000591252 911 ntBASIC15.33■□□□□ 0.04
CLHC1Q8NHS4 AC073389.1-201ENST00000595595 795 ntBASIC15.33■□□□□ 0.04
CLHC1Q8NHS4 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC15.33■□□□□ 0.04
CLHC1Q8NHS4 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CLHC1Q8NHS4 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC15.33■□□□□ 0.04
CLHC1Q8NHS4 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CLHC1Q8NHS4 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC15.33■□□□□ 0.04
CLHC1Q8NHS4 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CLHC1Q8NHS4 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
CLHC1Q8NHS4 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CLHC1Q8NHS4 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC15.33■□□□□ 0.04
CLHC1Q8NHS4 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CLHC1Q8NHS4 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
CLHC1Q8NHS4 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC15.33■□□□□ 0.04
CLHC1Q8NHS4 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CLHC1Q8NHS4 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CLHC1Q8NHS4 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CLHC1Q8NHS4 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
CLHC1Q8NHS4 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms