Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC20.82■□□□□ 0.92
HOXC9P31274 EMC4-209ENST00000559421 497 ntTSL 2 BASIC20.82■□□□□ 0.92
HOXC9P31274 TBCB-211ENST00000589996 724 ntTSL 3 BASIC20.82■□□□□ 0.92
HOXC9P31274 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HOXC9P31274 AL662844.4-201ENST00000606367 2838 ntBASIC20.82■□□□□ 0.92
HOXC9P31274 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HOXC9P31274 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC20.82■□□□□ 0.92
HOXC9P31274 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
HOXC9P31274 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HOXC9P31274 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
HOXC9P31274 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
HOXC9P31274 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HOXC9P31274 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HOXC9P31274 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HOXC9P31274 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC20.81■□□□□ 0.92
HOXC9P31274 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HOXC9P31274 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HOXC9P31274 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HOXC9P31274 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HOXC9P31274 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
HOXC9P31274 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HOXC9P31274 GUK1-206ENST00000366723 845 ntTSL 5 BASIC20.81■□□□□ 0.92
HOXC9P31274 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC20.81■□□□□ 0.92
HOXC9P31274 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC20.81■□□□□ 0.92
HOXC9P31274 AHRR-211ENST00000515206 462 ntTSL 5 BASIC20.81■□□□□ 0.92
HOXC9P31274 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC20.81■□□□□ 0.92
HOXC9P31274 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC20.81■□□□□ 0.92
HOXC9P31274 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC20.81■□□□□ 0.92
HOXC9P31274 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC20.81■□□□□ 0.92
HOXC9P31274 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC20.81■□□□□ 0.92
HOXC9P31274 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC20.81■□□□□ 0.92
HOXC9P31274 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
HOXC9P31274 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
HOXC9P31274 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
HOXC9P31274 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC20.81■□□□□ 0.92
HOXC9P31274 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HOXC9P31274 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
HOXC9P31274 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HOXC9P31274 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HOXC9P31274 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HOXC9P31274 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXC9P31274 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXC9P31274 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXC9P31274 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXC9P31274 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
HOXC9P31274 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC20.8■□□□□ 0.92
HOXC9P31274 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HOXC9P31274 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
HOXC9P31274 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXC9P31274 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXC9P31274 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC20.8■□□□□ 0.92
HOXC9P31274 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC20.8■□□□□ 0.92
HOXC9P31274 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXC9P31274 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC20.8■□□□□ 0.92
HOXC9P31274 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXC9P31274 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC20.8■□□□□ 0.92
HOXC9P31274 PFN1P12-201ENST00000455938 534 ntBASIC20.8■□□□□ 0.92
HOXC9P31274 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC20.8■□□□□ 0.92
HOXC9P31274 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC20.8■□□□□ 0.92
HOXC9P31274 C2orf69P2-201ENST00000562032 1123 ntBASIC20.8■□□□□ 0.92
HOXC9P31274 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC20.8■□□□□ 0.92
HOXC9P31274 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC20.8■□□□□ 0.92
HOXC9P31274 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXC9P31274 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC20.8■□□□□ 0.92
HOXC9P31274 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC20.8■□□□□ 0.92
HOXC9P31274 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXC9P31274 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXC9P31274 MFF-204ENST00000353339 2186 ntTSL 5 BASIC20.8■□□□□ 0.92
HOXC9P31274 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
HOXC9P31274 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXC9P31274 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HOXC9P31274 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXC9P31274 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC20.8■□□□□ 0.92
HOXC9P31274 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
HOXC9P31274 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
HOXC9P31274 KRT8P35-201ENST00000483942 1338 ntBASIC20.79■□□□□ 0.92
HOXC9P31274 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC20.79■□□□□ 0.92
HOXC9P31274 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
HOXC9P31274 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HOXC9P31274 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HOXC9P31274 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
HOXC9P31274 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC20.79■□□□□ 0.92
HOXC9P31274 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HOXC9P31274 PCDHA14-201ENST00000506751 2298 ntBASIC20.79■□□□□ 0.92
HOXC9P31274 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC20.79■□□□□ 0.92
HOXC9P31274 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HOXC9P31274 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HOXC9P31274 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC20.79■□□□□ 0.92
HOXC9P31274 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HOXC9P31274 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HOXC9P31274 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC20.79■□□□□ 0.92
HOXC9P31274 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HOXC9P31274 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
HOXC9P31274 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC20.79■□□□□ 0.92
HOXC9P31274 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC20.79■□□□□ 0.92
HOXC9P31274 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC20.79■□□□□ 0.92
HOXC9P31274 KRT18P25-201ENST00000508931 1278 ntBASIC20.79■□□□□ 0.92
HOXC9P31274 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
HOXC9P31274 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC20.79■□□□□ 0.92
HOXC9P31274 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms