Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 DNAJB1P1-201ENST00000429417 1024 ntBASIC21.89■■□□□ 1.09
NPHP4O75161 AC104073.2-201ENST00000453737 312 ntBASIC21.89■■□□□ 1.09
NPHP4O75161 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC21.89■■□□□ 1.09
NPHP4O75161 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC21.89■■□□□ 1.09
NPHP4O75161 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC21.89■■□□□ 1.09
NPHP4O75161 MIR4783-201ENST00000580343 82 ntBASIC21.89■■□□□ 1.09
NPHP4O75161 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC21.89■■□□□ 1.09
NPHP4O75161 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
NPHP4O75161 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
NPHP4O75161 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
NPHP4O75161 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC21.88■■□□□ 1.09
NPHP4O75161 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
NPHP4O75161 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
NPHP4O75161 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC21.88■■□□□ 1.09
NPHP4O75161 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
NPHP4O75161 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
NPHP4O75161 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC21.88■■□□□ 1.09
NPHP4O75161 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
NPHP4O75161 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
NPHP4O75161 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
NPHP4O75161 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
NPHP4O75161 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
NPHP4O75161 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
NPHP4O75161 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
NPHP4O75161 GHSR-202ENST00000427970 912 ntBASIC21.88■■□□□ 1.09
NPHP4O75161 NEU3-205ENST00000531619 582 ntTSL 5 BASIC21.88■■□□□ 1.09
NPHP4O75161 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC21.88■■□□□ 1.09
NPHP4O75161 RN7SL163P-201ENST00000583100 276 ntBASIC21.88■■□□□ 1.09
NPHP4O75161 PCBP2-OT1-201ENST00000634357 590 ntBASIC21.88■■□□□ 1.09
NPHP4O75161 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC21.88■■□□□ 1.09
NPHP4O75161 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
NPHP4O75161 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
NPHP4O75161 MVK-214ENST00000629016 1591 ntTSL 5 BASIC21.87■■□□□ 1.09
NPHP4O75161 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC21.87■■□□□ 1.09
NPHP4O75161 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC21.87■■□□□ 1.09
NPHP4O75161 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
NPHP4O75161 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
NPHP4O75161 AC018892.3-201ENST00000623986 2499 ntBASIC21.87■■□□□ 1.09
NPHP4O75161 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
NPHP4O75161 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
NPHP4O75161 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
NPHP4O75161 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC21.87■■□□□ 1.09
NPHP4O75161 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC21.87■■□□□ 1.09
NPHP4O75161 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC21.87■■□□□ 1.09
NPHP4O75161 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC21.87■■□□□ 1.09
NPHP4O75161 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
NPHP4O75161 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
NPHP4O75161 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
NPHP4O75161 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
NPHP4O75161 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
NPHP4O75161 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
NPHP4O75161 MIR1227-201ENST00000408484 88 ntBASIC21.87■■□□□ 1.09
NPHP4O75161 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC21.87■■□□□ 1.09
NPHP4O75161 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
NPHP4O75161 AL160314.3-201ENST00000556041 767 ntBASIC21.87■■□□□ 1.09
NPHP4O75161 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC21.87■■□□□ 1.09
NPHP4O75161 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC21.87■■□□□ 1.09
NPHP4O75161 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
NPHP4O75161 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC21.86■■□□□ 1.09
NPHP4O75161 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
NPHP4O75161 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
NPHP4O75161 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
NPHP4O75161 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
NPHP4O75161 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
NPHP4O75161 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
NPHP4O75161 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
NPHP4O75161 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
NPHP4O75161 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
NPHP4O75161 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
NPHP4O75161 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC21.86■■□□□ 1.09
NPHP4O75161 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC21.86■■□□□ 1.09
NPHP4O75161 AC097065.1-201ENST00000425737 517 ntBASIC21.86■■□□□ 1.09
NPHP4O75161 TUBB8P8-201ENST00000458717 1058 ntBASIC21.86■■□□□ 1.09
NPHP4O75161 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC21.86■■□□□ 1.09
NPHP4O75161 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
NPHP4O75161 AC141586.1-203ENST00000567242 366 ntBASIC21.86■■□□□ 1.09
NPHP4O75161 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC21.86■■□□□ 1.09
NPHP4O75161 AC005324.6-201ENST00000587972 613 ntBASIC21.86■■□□□ 1.09
NPHP4O75161 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC21.86■■□□□ 1.09
NPHP4O75161 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
NPHP4O75161 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
NPHP4O75161 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
NPHP4O75161 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
NPHP4O75161 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
NPHP4O75161 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
NPHP4O75161 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC21.85■■□□□ 1.09
NPHP4O75161 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
NPHP4O75161 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
NPHP4O75161 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC21.85■■□□□ 1.09
NPHP4O75161 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
NPHP4O75161 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC21.85■■□□□ 1.09
NPHP4O75161 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
NPHP4O75161 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
NPHP4O75161 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
NPHP4O75161 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
NPHP4O75161 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
NPHP4O75161 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC21.85■■□□□ 1.09
NPHP4O75161 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC21.85■■□□□ 1.09
NPHP4O75161 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
NPHP4O75161 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 65.5 ms