Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC15.38■□□□□ 0.05
SLC28A1O00337 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
SLC28A1O00337 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC15.38■□□□□ 0.05
SLC28A1O00337 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
SLC28A1O00337 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
SLC28A1O00337 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
SLC28A1O00337 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
SLC28A1O00337 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC15.38■□□□□ 0.05
SLC28A1O00337 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
SLC28A1O00337 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SLC28A1O00337 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
SLC28A1O00337 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC15.37■□□□□ 0.05
SLC28A1O00337 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
SLC28A1O00337 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SLC28A1O00337 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC15.37■□□□□ 0.05
SLC28A1O00337 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
SLC28A1O00337 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC15.37■□□□□ 0.05
SLC28A1O00337 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SLC28A1O00337 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC15.37■□□□□ 0.05
SLC28A1O00337 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SLC28A1O00337 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC15.37■□□□□ 0.05
SLC28A1O00337 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
SLC28A1O00337 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SLC28A1O00337 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SLC28A1O00337 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
SLC28A1O00337 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SLC28A1O00337 RAC2-202ENST00000401529 569 ntTSL 4 BASIC15.37■□□□□ 0.05
SLC28A1O00337 FAM58CP-201ENST00000435741 640 ntBASIC15.37■□□□□ 0.05
SLC28A1O00337 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC15.37■□□□□ 0.05
SLC28A1O00337 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC15.37■□□□□ 0.05
SLC28A1O00337 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC15.37■□□□□ 0.05
SLC28A1O00337 SLC25A1P1-201ENST00000528351 927 ntBASIC15.37■□□□□ 0.05
SLC28A1O00337 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
SLC28A1O00337 MIR4313-201ENST00000580760 101 ntBASIC15.37■□□□□ 0.05
SLC28A1O00337 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC15.37■□□□□ 0.05
SLC28A1O00337 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC15.37■□□□□ 0.05
SLC28A1O00337 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
SLC28A1O00337 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
SLC28A1O00337 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC15.37■□□□□ 0.05
SLC28A1O00337 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
SLC28A1O00337 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
SLC28A1O00337 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC15.37■□□□□ 0.05
SLC28A1O00337 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
SLC28A1O00337 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
SLC28A1O00337 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
SLC28A1O00337 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
SLC28A1O00337 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SLC28A1O00337 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC15.37■□□□□ 0.05
SLC28A1O00337 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC15.37■□□□□ 0.05
SLC28A1O00337 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
SLC28A1O00337 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SLC28A1O00337 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SLC28A1O00337 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC15.36■□□□□ 0.05
SLC28A1O00337 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SLC28A1O00337 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC15.36■□□□□ 0.05
SLC28A1O00337 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC15.36■□□□□ 0.05
SLC28A1O00337 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC15.36■□□□□ 0.05
SLC28A1O00337 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC15.36■□□□□ 0.05
SLC28A1O00337 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SLC28A1O00337 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SLC28A1O00337 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC15.36■□□□□ 0.05
SLC28A1O00337 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SLC28A1O00337 HLA-H-201ENST00000383620 1096 ntBASIC15.36■□□□□ 0.05
SLC28A1O00337 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
SLC28A1O00337 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC15.36■□□□□ 0.05
SLC28A1O00337 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC15.36■□□□□ 0.05
SLC28A1O00337 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC15.36■□□□□ 0.05
SLC28A1O00337 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC15.36■□□□□ 0.05
SLC28A1O00337 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SLC28A1O00337 SPDYE11-202ENST00000450699 704 ntBASIC15.36■□□□□ 0.05
SLC28A1O00337 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC15.36■□□□□ 0.05
SLC28A1O00337 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC15.36■□□□□ 0.05
SLC28A1O00337 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC15.36■□□□□ 0.05
SLC28A1O00337 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC15.36■□□□□ 0.05
SLC28A1O00337 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC15.36■□□□□ 0.05
SLC28A1O00337 SPDYE9P-201ENST00000570642 692 ntBASIC15.36■□□□□ 0.05
SLC28A1O00337 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC15.36■□□□□ 0.05
SLC28A1O00337 AC120114.3-201ENST00000611923 658 ntBASIC15.36■□□□□ 0.05
SLC28A1O00337 SPDYE10P-202ENST00000612005 668 ntBASIC15.36■□□□□ 0.05
SLC28A1O00337 SPDYE8P-202ENST00000612377 668 ntBASIC15.36■□□□□ 0.05
SLC28A1O00337 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC15.36■□□□□ 0.05
SLC28A1O00337 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SLC28A1O00337 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SLC28A1O00337 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
SLC28A1O00337 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC15.36■□□□□ 0.05
SLC28A1O00337 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC15.36■□□□□ 0.05
SLC28A1O00337 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
SLC28A1O00337 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC15.36■□□□□ 0.05
SLC28A1O00337 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC15.36■□□□□ 0.05
SLC28A1O00337 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC15.36■□□□□ 0.05
SLC28A1O00337 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SLC28A1O00337 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC15.36■□□□□ 0.05
SLC28A1O00337 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
SLC28A1O00337 AC018892.3-201ENST00000623986 2499 ntBASIC15.36■□□□□ 0.05
SLC28A1O00337 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC15.36■□□□□ 0.05
SLC28A1O00337 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SLC28A1O00337 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC15.36■□□□□ 0.05
SLC28A1O00337 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC15.36■□□□□ 0.05
SLC28A1O00337 AC138035.3-201ENST00000622706 2791 ntBASIC15.36■□□□□ 0.05
SLC28A1O00337 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms